Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3661 Fragaria x ananassa HOM05D000172 ORTHO05D000273 8.1e-35 149.8 74 100.0
FvH4_6g09270 Fragaria vesca HOM05D000172 ORTHO05D000273 1.7e-29 132.1 70 92.9
FAN09G3345 Fragaria x ananassa HOM05D000172 ORTHO05D000273 1.7e-29 132.1 70 92.9
FAN14G0139 Fragaria x ananassa HOM05D000172 ORTHO05D000273 1.7e-29 132.1 70 92.9
FAN14G1210 Fragaria x ananassa HOM05D000172 ORTHO05D000273 1.7e-29 132.1 70 92.9
RcHm_v2.0_Chr3g0459631 Rosa chinensis HOM05D000172 ORTHO05D000273 1.0e-21 106.3 70 75.7
MD12G1194600 Malus domestica HOM05D000172 ORTHO05D000273 5.1e-21 104.0 70 68.6
MD04G1179500 Malus domestica HOM05D000172 ORTHO05D000273 1.1e-18 96.3 70 65.7
Atru.chr8.48 Acer truncatum HOM05D000172 ORTHO05D000273 9.0e-18 93.2 70 64.3
Potri.016G142300 Populus trichocarpa HOM05D000172 ORTHO05D000273 1.2e-17 92.8 70 62.9
Prupe.6G299500 Prunus persica HOM05D000172 ORTHO05D000273 1.5e-17 92.4 70 64.3
ClCG04G006090 Citrullus lanatus HOM05D000172 ORTHO05D000273 3.4e-17 91.3 70 64.3
CsaV3_4G027470 Cucumis sativus L. HOM05D000172 ORTHO05D000273 6.4e-16 87.0 70 60.0
Eucgr.K01312 Eucalyptus grandis HOM05D000172 ORTHO05D000273 8.4e-16 86.7 70 57.1
PGR004G0730 Punica granatum HOM05D000172 ORTHO05D000273 1.1e-15 86.3 70 57.1
COL.COLO4_29931 Corchorus olitorius HOM05D000172 ORTHO05D000273 1.2e-14 82.8 70 52.9
Cpa.g.sc60.57 Carica papaya HOM05D000172 ORTHO05D000273 1.6e-14 82.4 70 52.9
Eucgr.K01313 Eucalyptus grandis HOM05D000172 ORTHO05D000273 1.6e-14 82.4 70 54.3
TPR.G30721 Trifolium pratense HOM05D000172 ORTHO05D000273 1.6e-14 82.4 70 58.6
Potri.006G112800 Populus trichocarpa HOM05D000172 ORTHO05D000273 2.1e-14 82.0 70 58.6
Thecc.04G170100 Theobroma cacao HOM05D000172 ORTHO05D000273 2.7e-14 81.6 70 52.9
Duzib268G1393 Durio zibethinus HOM05D000172 ORTHO05D000273 3.5e-14 81.3 69 53.6
ClCG02G019140 Citrullus lanatus HOM05D000172 ORTHO05D000273 6.0e-14 80.5 70 48.6
Glyma.03G000800 Glycine max HOM05D000172 ORTHO05D000273 6.0e-14 80.5 70 54.3
Carub.0005s2079 Capsella rubella HOM05D000172 ORTHO05D000273 7.9e-14 80.1 70 58.6
SHI54413 Sapria himalayana HOM05D000172 ORTHO05D000273 7.9e-14 80.1 70 51.4
Sed0018523 Sechium edule HOM05D000172 ORTHO05D000273 1.0e-13 79.7 70 55.7
Lj3g0005630 Lotus japonicus HOM05D000172 ORTHO05D000273 1.3e-13 79.3 70 54.3
TWI53G0244 Tripterygium wilfordii HOM05D000172 ORTHO05D000273 1.3e-13 79.3 70 57.1
Phvul.010G060100 Phaseolus vulgaris HOM05D000172 ORTHO05D000273 1.8e-13 79.0 70 52.9
arahy.Tifrunner.gnm1.ann1.GQ7PCB Arachis hypogaea HOM05D000172 ORTHO05D000273 2.3e-13 78.6 70 52.9
arahy.Tifrunner.gnm1.ann1.K3DWLG Arachis hypogaea HOM05D000172 ORTHO05D000273 2.3e-13 78.6 70 52.9
Eucgr.K01311 Eucalyptus grandis HOM05D000172 ORTHO05D000273 2.3e-13 78.6 70 54.3
Glyma.13G000500 Glycine max HOM05D000172 ORTHO05D000273 2.3e-13 78.6 70 52.9
VMungo1383G0075 Vigna mungo HOM05D000172 ORTHO05D000273 2.3e-13 78.6 70 52.9
Sc07g0006110 Simmondsia chinensis HOM05D000172 ORTHO05D000273 3.0e-13 78.2 70 52.9
AL5G35240 Arabidopsis lyrata HOM05D000172 ORTHO05D000273 3.9e-13 77.8 70 55.7
AT3G54200 Arabidopsis thaliana HOM05D000172 ORTHO05D000273 3.9e-13 77.8 70 55.7
Lalb_Chr13g0290311 Lupinus albus HOM05D000172 ORTHO05D000273 3.9e-13 77.8 70 54.3
Medtr8g005060 Medicago truncatula HOM05D000172 ORTHO05D000273 3.9e-13 77.8 70 52.9
Duzib151G1182 Durio zibethinus HOM05D000172 ORTHO05D000273 5.1e-13 77.4 70 51.4
Glyma.16G221900 Glycine max HOM05D000172 ORTHO05D000273 5.1e-13 77.4 70 52.9
Manes.09G120400 Manihot esculenta HOM05D000172 ORTHO05D000273 5.1e-13 77.4 69 56.5
TWI74G0559 Tripterygium wilfordii HOM05D000172 ORTHO05D000273 6.7e-13 77.0 70 52.9
Thhalv10010532m.g Eutrema salsugineum HOM05D000172 ORTHO05D000273 1.1e-12 76.3 70 52.9
Gohir.D06G119300 Gossypium hirsutum HOM05D000172 ORTHO05D000273 1.1e-12 76.3 70 52.9
QL07p030569 Quercus lobata HOM05D000172 ORTHO05D000273 1.1e-12 76.3 71 56.3
CiPaw.15G162300 Carya illinoinensis HOM05D000172 ORTHO05D000273 1.5e-12 75.9 71 50.7
Psat2g191160 Pisum sativum HOM05D000172 ORTHO05D000273 1.5e-12 75.9 70 51.4
Gorai.010G137000 Gossypium raimondii HOM05D000172 ORTHO05D000273 2.5e-12 75.1 68 52.9
Aa31sc488G30 Aethionema arabicum HOM05D000172 ORTHO05D000273 3.3e-12 74.7 70 54.3
Hma1.2p1_0805F.1_g221120 Hydrangea macrophylla HOM05D000172 ORTHO05D000273 3.3e-12 74.7 70 51.4
Cfa016989 Carpinus fangiana HOM05D000172 ORTHO05D000273 4.3e-12 74.3 70 52.9
Gohir.A06G114602 Gossypium hirsutum HOM05D000172 ORTHO05D000273 4.3e-12 74.3 70 50.0
CiPaw.04G114700 Carya illinoinensis HOM05D000172 ORTHO05D000273 5.6e-12 73.9 70 50.0
QL07p031488 Quercus lobata HOM05D000172 ORTHO05D000273 5.6e-12 73.9 70 54.3
Aa31LG11G12460 Aethionema arabicum HOM05D000172 ORTHO05D000273 7.4e-12 73.6 70 54.3
CSS0041751 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000273 7.4e-12 73.6 70 51.4
CANSAT78G1744 Cannabis sativa HOM05D000172 ORTHO05D000273 7.4e-12 73.6 71 52.1
BraA09t40181Z Brassica rapa HOM05D000172 ORTHO05D000273 9.6e-12 73.2 70 51.4
CARHR164120 Cardamine hirsuta HOM05D000172 ORTHO05D000273 9.6e-12 73.2 70 54.3
A09p47200 Brassica napus HOM05D000172 ORTHO05D000273 1.3e-11 72.8 70 51.4
CSS0010033 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000273 1.3e-11 72.8 70 50.0
Gohir.D02G108800 Gossypium hirsutum HOM05D000172 ORTHO05D000273 1.6e-11 72.4 72 47.2
Gorai.005G124900 Gossypium raimondii HOM05D000172 ORTHO05D000273 1.6e-11 72.4 72 47.2
BcaC07g39762 Brassica carinata HOM05D000172 ORTHO05D000273 2.1e-11 72.0 70 51.4
C08p29460 Brassica napus HOM05D000172 ORTHO05D000273 2.1e-11 72.0 70 51.4
BolC8t50548H Brassica oleracea HOM05D000172 ORTHO05D000273 2.1e-11 72.0 70 51.4
AUR62029813 Chenopodium quinoa HOM05D000172 ORTHO05D000273 2.1e-11 72.0 70 45.7
Manes.08G167100 Manihot esculenta HOM05D000172 ORTHO05D000273 2.8e-11 71.6 70 50.0
Dinv16927 Davidia involucrata HOM05D000172 ORTHO05D000273 3.7e-11 71.2 70 50.0
Gohir.A02G092000 Gossypium hirsutum HOM05D000172 ORTHO05D000273 4.8e-11 70.9 72 45.8
Sp5g08200 Schrenkiella parvula HOM05D000172 ORTHO05D000273 4.8e-11 70.9 70 52.9
Sed0013141 Sechium edule HOM05D000172 ORTHO05D000273 4.8e-11 70.9 70 47.1
Ah.06g188020 Amaranthus hybridus HOM05D000172 ORTHO05D000273 6.2e-11 70.5 69 49.3
BcaB01g00210 Brassica carinata HOM05D000172 ORTHO05D000273 1.1e-10 69.7 70 50.0
A07p22030 Brassica napus HOM05D000172 ORTHO05D000273 1.1e-10 69.7 70 47.1
C06p22010 Brassica napus HOM05D000172 ORTHO05D000273 1.1e-10 69.7 70 47.1
CsaV3_6G019050 Cucumis sativus L. HOM05D000172 ORTHO05D000273 1.1e-10 69.7 69 43.5
Lj1g0012509 Lotus japonicus HOM05D000172 ORTHO05D000273 1.4e-10 69.3 70 47.1
Eucgr.A00854 Eucalyptus grandis HOM05D000172 ORTHO05D000273 2.4e-10 68.6 70 48.6
BcaB02g07744 Brassica carinata HOM05D000172 ORTHO05D000273 4.0e-10 67.8 70 44.3
AUR62006457 Chenopodium quinoa HOM05D000172 ORTHO05D000273 4.0e-10 67.8 70 44.3
Psat0s2966g0080 Pisum sativum HOM05D000172 ORTHO05D000273 4.0e-10 67.8 70 47.1
Ciclev10012736m.g Citrus clementina HOM05D000172 ORTHO05D000273 5.3e-10 67.4 70 48.6
Ca_23105_v3 Cicer arietinum L. HOM05D001078 ORTHO05D000273 9.0e-10 66.6 64 53.1
MELO3C026872.2 Cucumis melo HOM05D000172 ORTHO05D000273 1.2e-09 66.2 70 38.6
Lj3P938T22 Lonicera japonica HOM05D000172 ORTHO05D000273 1.2e-09 66.2 71 49.3
Cc06_g00110 Coffea canephora HOM05D000172 ORTHO05D000273 2.0e-09 65.5 70 50.0
Lsat_1_v5_gn_9_40000 Lactuca sativa HOM05D000172 ORTHO05D000273 2.0e-09 65.5 61 45.9
Glyma.18G218800 Glycine max HOM05D000172 ORTHO05D000273 2.6e-09 65.1 70 47.1
Lsat_1_v5_gn_8_109761 Lactuca sativa HOM05D000172 ORTHO05D000273 3.4e-09 64.7 69 43.5
Aqoxy2G00681 Aquilegia oxysepala HOM05D000172 ORTHO05D000273 5.8e-09 63.9 71 46.5
SMO119G0408 Selaginella moellendorffii HOM05D000172 ORTHO05D000273 5.8e-09 63.9 61 49.2
unitig_26.g8966 Utricularia gibba HOM05D000172 ORTHO05D000273 5.8e-09 63.9 68 42.6
THA.LOC104806281 Tarenaya hassleriana HOM05D000172 ORTHO05D000273 7.6e-09 63.5 70 44.3
HPP92_003274 Vanilla planifolia HOM05D000172 ORTHO05D000273 7.6e-09 63.5 69 43.5
DCAR_018644 Daucus carota HOM05D000172 ORTHO05D000273 1.0e-08 63.2 71 46.5
Ah.15g092330 Amaranthus hybridus HOM05D000172 ORTHO05D000273 1.3e-08 62.8 70 41.4
DCAR_003037 Daucus carota HOM05D000172 ORTHO05D000273 1.3e-08 62.8 70 45.7
MD04G1179400 Malus domestica HOM05D000172 ORTHO05D000273 1.7e-08 62.4 65 46.2
MSTRG.18924 Avicennia marina HOM05D000172 ORTHO05D000273 2.2e-08 62.0 70 42.9
Oeu026920.1 Olea europaea HOM05D000172 ORTHO05D000273 3.8e-08 61.2 70 44.3
Os12g0119800 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 3.8e-08 61.2 69 43.5
Sabra04G0158400 Salix brachista HOM05D000172 ORTHO05D000273 3.8e-08 61.2 69 44.9
CDE07G1919 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 4.9e-08 60.8 70 48.6
Migut.J00005 Erythranthe guttata HOM05D000172 ORTHO05D000273 4.9e-08 60.8 70 44.3
HanXRQChr11g0345001 Helianthus annuus HOM05D000172 ORTHO05D000273 4.9e-08 60.8 67 44.8
Os11g0120100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 4.9e-08 60.8 69 43.5
TPR.G24305 Trifolium pratense HOM05D000172 ORTHO05D000273 6.5e-08 60.5 68 44.1
ECA247G0525 Erigeron canadensis HOM05D000172 ORTHO05D000273 8.4e-08 60.1 69 40.6
MD12G1194500 Malus domestica HOM05D000172 ORTHO05D000273 8.4e-08 60.1 65 43.1
Manes.09G120500 Manihot esculenta HOM05D000172 ORTHO05D000273 8.4e-08 60.1 69 40.6
SGA_v2.0_scaffold373G50204 Striga asiatica HOM05D000172 ORTHO05D000273 8.4e-08 60.1 70 42.9
Cfa016990 Carpinus fangiana HOM05D000172 ORTHO05D000273 1.4e-07 59.3 69 39.1
GSVIVG01029849001 Vitis vinifera HOM05D000172 ORTHO05D000273 1.4e-07 59.3 69 39.1
Phvul.008G078300 Phaseolus vulgaris HOM05D000172 ORTHO05D000273 1.9e-07 58.9 70 40.0
Potri.016G142200 Populus trichocarpa HOM05D000172 ORTHO05D000273 1.9e-07 58.9 69 43.5
VMungo1383G0976 Vigna mungo HOM05D000172 ORTHO05D000273 1.9e-07 58.9 71 40.8
BcaC08g44674 Brassica carinata HOM05D000172 ORTHO05D000273 2.5e-07 58.5 63 44.4
BolC6t37389H Brassica oleracea HOM05D000172 ORTHO05D000273 2.5e-07 58.5 63 44.4
BraA07t29886Z Brassica rapa HOM05D000172 ORTHO05D000273 2.5e-07 58.5 63 44.4
Ciclev10012748m.g Citrus clementina HOM05D000172 ORTHO05D000273 2.5e-07 58.5 69 42.0
ATR1127G172 Amborella trichopoda HOM05D000172 ORTHO05D000273 3.2e-07 58.2 70 38.6
Glyma.18G218700 Glycine max HOM05D000172 ORTHO05D000273 3.2e-07 58.2 68 39.7
Lj2C55T1 Lonicera japonica HOM05D000172 ORTHO05D000273 3.2e-07 58.2 62 45.2
Cpa.g.sc60.58 Carica papaya HOM05D000172 ORTHO05D000273 4.2e-07 57.8 66 43.9
Phvul.008G078400 Phaseolus vulgaris HOM05D000172 ORTHO05D000273 4.2e-07 57.8 69 42.0
VMungo1383G1980 Vigna mungo HOM05D000172 ORTHO05D000273 5.5e-07 57.4 69 42.0
PSO384G2764 Papaver somniferum HOM05D000172 ORTHO05D000273 7.1e-07 57.0 69 42.0
Rhsim05G0234400 Rhododendron simsii HOM05D000172 ORTHO05D000273 7.1e-07 57.0 55 49.1
CARHR164100 Cardamine hirsuta HOM05D000172 ORTHO05D000273 9.3e-07 56.6 70 42.9
CAN.G110.10 Capsicum annuum HOM05D000172 ORTHO05D000273 1.2e-06 56.2 70 45.7
Prupe.6G299300 Prunus persica HOM05D000172 ORTHO05D000273 1.2e-06 56.2 65 46.2
TWI74G1663 Tripterygium wilfordii HOM05D000172 ORTHO05D000273 1.6e-06 55.8 69 39.1
Mapoly0088s0022 Marchantia polymorpha HOM05D000172 ORTHO05D000273 2.1e-06 55.5 61 41.0
Nitab4.5_0000274g0180 Nicotiana tabacum HOM05D000172 ORTHO05D000273 2.7e-06 55.1 72 44.4
CAN.G756.33 Capsicum annuum HOM05D000172 ORTHO05D000273 3.5e-06 54.7 69 44.9
Psat3g116880 Pisum sativum HOM05D000172 ORTHO05D000273 3.5e-06 54.7 69 39.1
Thecc.04G001300 Theobroma cacao HOM05D000172 ORTHO05D000273 3.5e-06 54.7 68 39.7
Ah.06g188010 Amaranthus hybridus HOM05D000172 ORTHO05D000273 4.6e-06 54.3 69 42.0
Lalb_Chr01g0024011 Lupinus albus HOM05D000172 ORTHO05D000273 4.6e-06 54.3 69 36.2
Prupe.6G299100 Prunus persica HOM05D000172 ORTHO05D000273 6.0e-06 53.9 69 39.1
Sopen09g026000 Solanum pennellii HOM05D000172 ORTHO05D000273 6.0e-06 53.9 70 45.7
AL3G16780 Arabidopsis lyrata HOM05D000172 ORTHO05D000273 7.9e-06 53.5 68 36.8
Prupe.6G299400 Prunus persica HOM05D000172 ORTHO05D000273 7.9e-06 53.5 59 49.2
Solyc09g031920.1 Solanum lycopersicum HOM05D000172 ORTHO05D000273 7.9e-06 53.5 70 45.7
Zm00001eb093800 Zea mays HOM05D000172 ORTHO05D000273 7.9e-06 53.5 69 37.7


User provided reference genes

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