Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3232 Fragaria x ananassa HOM05D001810 ORTHO05D003876 2.4e-38 161.8 87 100.0
FAN02G1520 Fragaria x ananassa HOM05D001810 ORTHO05D003876 1.3e-31 139.4 75 98.7
FAN09G1684 Fragaria x ananassa HOM05D001810 ORTHO05D003876 1.3e-31 139.4 77 97.4
FvH4_6g37010 Fragaria vesca HOM05D001810 ORTHO05D003876 7.0e-30 133.7 73 97.3
RcHm_v2.0_Chr2g0149551 Rosa chinensis HOM05D001810 ORTHO05D003876 1.7e-28 129.0 73 93.2
Prupe.3G022600 Prunus persica HOM05D001810 ORTHO05D003876 1.2e-21 106.3 70 80.0
Cfa002155 Carpinus fangiana HOM05D001810 ORTHO05D003876 2.8e-18 95.1 69 73.9
Haze_16256 Corylus avellana HOM05D001810 ORTHO05D003876 4.7e-18 94.4 69 73.9
Thecc.06G057700 Theobroma cacao HOM05D001810 ORTHO05D003876 1.8e-17 92.4 70 70.0
Rhsim03G0090500 Rhododendron simsii HOM05D001810 ORTHO05D003876 2.4e-17 92.0 70 70.0
Rhsim12G0215300 Rhododendron simsii HOM05D001810 ORTHO05D003876 2.4e-17 92.0 70 70.0
CiPaw.01G091100 Carya illinoinensis HOM05D001810 ORTHO05D003876 3.1e-17 91.7 73 67.1
CSS0035377 Camellia sinensis var. sinensis HOM05D001810 ORTHO05D003876 4.0e-17 91.3 70 68.6
Ciclev10033044m.g Citrus clementina HOM05D001810 ORTHO05D003876 6.8e-17 90.5 69 69.6
QL03p005885 Quercus lobata HOM05D001810 ORTHO05D003876 1.2e-16 89.7 73 68.5
QL03p006486 Quercus lobata HOM05D001810 ORTHO05D003876 1.2e-16 89.7 73 68.5
vmacro17966 Vaccinium macrocarpon HOM05D001810 ORTHO05D003876 2.0e-16 89.0 70 68.6
GSVIVG01029544001 Vitis vinifera HOM05D001810 ORTHO05D003876 2.0e-16 89.0 70 68.6
Nn8g40872 Nelumbo nucifera HOM05D001810 ORTHO05D003876 4.4e-16 87.8 72 66.7
CSS0008124 Camellia sinensis var. sinensis HOM05D001810 ORTHO05D003876 9.9e-16 86.7 70 67.1
Atru.chr1.2655 Acer truncatum HOM05D001810 ORTHO05D005662 3.8e-15 84.7 75 64.0
TWI18G1195 Tripterygium wilfordii HOM05D001810 ORTHO05D005662 4.9e-15 84.3 71 67.6
Duzib235G1221 Durio zibethinus HOM05D001810 ORTHO05D005662 6.4e-15 84.0 73 67.1
QL05p084549 Quercus lobata HOM05D001810 ORTHO05D003876 1.1e-14 83.2 73 64.4
QL05p084923 Quercus lobata HOM05D001810 ORTHO05D003876 1.1e-14 83.2 73 64.4
Actinidia21885 Actinidia chinensis HOM05D001810 ORTHO05D003876 2.4e-14 82.0 73 58.9
COL.COLO4_31159 Corchorus olitorius HOM05D001810 ORTHO05D003876 1.2e-13 79.7 78 62.8
TAR626G1359 Trochodendron aralioides HOM05D001810 ORTHO05D003876 1.2e-13 79.7 72 63.9
Actinidia21653 Actinidia chinensis HOM05D001810 ORTHO05D003876 2.1e-13 79.0 50 78.0
Manes.14G008100 Manihot esculenta HOM05D001810 ORTHO05D003876 3.5e-13 78.2 69 63.8
Gohir.D05G115100 Gossypium hirsutum HOM05D001810 ORTHO05D003876 4.6e-13 77.8 74 62.2
FAN14G2000 Fragaria x ananassa HOM05D001810 ORTHO05D003876 7.8e-13 77.0 50 90.0
MBI18_g21785_MAGBIO Magnolia biondii HOM05D001810 ORTHO05D003876 1.3e-12 76.3 61 67.2
Gohir.A05G114700 Gossypium hirsutum HOM05D001810 ORTHO05D003876 2.3e-12 75.5 74 60.8
MD09G1165100 Malus domestica HOM05D001810 ORTHO05D003876 3.0e-12 75.1 72 65.3
MELO3C026711.2 Cucumis melo HOM05D001810 ORTHO05D003876 3.9e-12 74.7 73 60.3
vmacro06801 Vaccinium macrocarpon HOM05D001810 ORTHO05D003876 5.1e-12 74.3 75 60.0
CsaV3_3G030510 Cucumis sativus L. HOM05D001810 ORTHO05D003876 6.6e-12 73.9 73 60.3
AT1G16810 Arabidopsis thaliana HOM05D001810 ORTHO05D003876 8.7e-12 73.6 75 54.7
Lalb_Chr01g0011711 Lupinus albus HOM05D001810 ORTHO05D003876 1.1e-11 73.2 73 64.4
Hma1.2p1_3612F.1_g337040 Hydrangea macrophylla HOM05D001810 ORTHO05D003876 1.5e-11 72.8 71 64.8
Hma1.2p1_0517F.1_g170810 Hydrangea macrophylla HOM05D001810 ORTHO05D003876 1.9e-11 72.4 71 64.8
Nitab4.5_0003466g0020 Nicotiana tabacum HOM05D001810 ORTHO05D003876 1.9e-11 72.4 76 59.2
Hma1.2p1_1111F.1_g258420 Hydrangea macrophylla HOM05D001810 ORTHO05D003876 2.5e-11 72.0 90 53.3
Nitab4.5_0000570g0230 Nicotiana tabacum HOM05D001810 ORTHO05D003876 2.5e-11 72.0 71 63.4
PGSC0003DMG400004633 Solanum tuberosum HOM05D001810 ORTHO05D003876 2.5e-11 72.0 71 60.6
AL1G28980 Arabidopsis lyrata HOM05D001810 ORTHO05D003876 5.6e-11 70.9 75 54.7
arahy.Tifrunner.gnm1.ann1.PFN72X Arachis hypogaea HOM05D001810 ORTHO05D005662 1.3e-10 69.7 72 54.2
TPR.G38727 Trifolium pratense HOM05D001810 ORTHO05D003876 1.3e-10 69.7 69 56.5
Peaxi162Scf00045g01524 Petunia axillaris HOM05D001810 ORTHO05D003876 2.1e-10 68.9 70 58.6
Sabra10G0197100 Salix brachista HOM05D001810 ORTHO05D003876 2.1e-10 68.9 73 58.9
Sc15g0001110 Simmondsia chinensis HOM05D001810 ORTHO05D003876 2.8e-10 68.6 73 54.8
Solyc12g099490.3 Solanum lycopersicum HOM05D001810 ORTHO05D003876 2.8e-10 68.6 72 58.3
arahy.Tifrunner.gnm1.ann1.02QZYL Arachis hypogaea HOM05D001810 ORTHO05D005662 4.8e-10 67.8 72 54.2
Sopen12g034160 Solanum pennellii HOM05D001810 ORTHO05D003876 4.8e-10 67.8 71 59.2
Migut.I01198 Erythranthe guttata HOM05D001810 ORTHO05D003876 6.2e-10 67.4 75 60.0
Potri.010G253400 Populus trichocarpa HOM05D001810 ORTHO05D003876 6.2e-10 67.4 73 60.3
Dinv37779 Davidia involucrata HOM05D001810 ORTHO05D003876 2.4e-09 65.5 70 57.1
Eucgr.F04029 Eucalyptus grandis HOM05D001810 ORTHO05D003876 2.4e-09 65.5 75 52.0
Ah.15g094310 Amaranthus hybridus HOM05D001810 ORTHO05D003876 5.3e-09 64.3 69 55.1
DCAR_014051 Daucus carota HOM05D001810 ORTHO05D003876 5.3e-09 64.3 77 54.5
PSO170G2381 Papaver somniferum HOM05D001810 ORTHO05D003876 6.9e-09 63.9 71 59.2
CAN.G484.40 Capsicum annuum HOM05D001810 ORTHO05D003876 9.0e-09 63.5 75 52.0
Gorai.009G119200 Gossypium raimondii HOM05D001810 ORTHO05D003876 9.0e-09 63.5 66 59.1
Nitab4.5_0003259g0090 Nicotiana tabacum HOM05D001810 ORTHO05D003876 1.2e-08 63.2 68 57.4
PSO144G0068 Papaver somniferum HOM05D001810 ORTHO05D003876 1.2e-08 63.2 71 57.7
Sed0017404 Sechium edule HOM05D001810 ORTHO05D003876 1.2e-08 63.2 50 70.0
Hund05674 Selenicereus undatus HOM05D001810 ORTHO05D003876 1.5e-08 62.8 70 47.1
TAR383G0116 Trochodendron aralioides HOM05D042336 ORTHO05D003876 4.4e-08 61.2 36 86.1
A09p60740 Brassica napus HOM05D001810 ORTHO05D003876 5.8e-08 60.8 63 57.1
BraA09t41447Z Brassica rapa HOM05D001810 ORTHO05D003876 5.8e-08 60.8 63 57.1
Peaxi162Scf00700g00150 Petunia axillaris HOM05D001810 ORTHO05D003876 5.8e-08 60.8 67 53.7
EL10Ac7g18157 Beta vulgaris HOM05D001810 ORTHO05D003876 7.6e-08 60.5 76 46.1
Oeu038372.1 Olea europaea HOM05D001810 ORTHO05D003876 1.3e-07 59.7 96 42.7
Psat7g264280 Pisum sativum HOM05D001810 ORTHO05D003876 1.3e-07 59.7 67 56.7
unitig_0.g1638 Utricularia gibba HOM05D001810 ORTHO05D003876 1.3e-07 59.7 75 53.3
HPP92_015317 Vanilla planifolia HOM05D001810 ORTHO05D003876 1.7e-07 59.3 63 52.4
Cc04_g00170 Coffea canephora HOM05D001810 ORTHO05D003876 2.9e-07 58.5 90 50.0
Glyma.08G224300 Glycine max HOM05D001810 ORTHO05D003876 2.9e-07 58.5 67 53.7
Lj3g0014374 Lotus japonicus HOM05D001810 ORTHO05D003876 3.8e-07 58.2 71 56.3
Pp3c10_8030 Physcomitrium patens HOM05D001810 ORTHO05D003876 3.8e-07 58.2 61 54.1
Zm00001eb229720 Zea mays HOM05D001810 ORTHO05D003876 3.8e-07 58.2 54 63.0
Phvul.010G163800 Phaseolus vulgaris HOM05D001810 ORTHO05D003876 4.9e-07 57.8 66 54.5
Sc09g0007920 Simmondsia chinensis HOM05D001810 ORTHO05D003876 4.9e-07 57.8 43 72.1
CAN.G1364.5 Capsicum annuum HOM05D001810 ORTHO05D003876 6.4e-07 57.4 66 53.0
Medtr4g005440 Medicago truncatula HOM05D001810 ORTHO05D003876 6.4e-07 57.4 70 51.4
SEGI_29786 Sequoiadendron giganteum HOM05D001810 ORTHO05D003876 6.4e-07 57.4 75 46.7
ATR0691G256 Amborella trichopoda HOM05D001810 ORTHO05D003876 8.4e-07 57.0 77 53.2
Carub.0001s1654 Capsella rubella HOM05D001810 ORTHO05D003876 8.4e-07 57.0 75 46.7
AUR62038755 Chenopodium quinoa HOM05D001810 ORTHO05D003876 1.1e-06 56.6 61 54.1
Potri.005G174400 Populus trichocarpa HOM05D001810 ORTHO05D003876 1.1e-06 56.6 72 55.6
Zm00001eb229740 Zea mays HOM05D001810 ORTHO05D003876 1.1e-06 56.6 63 57.1
ClCG05G017450 Citrullus lanatus HOM05D001810 ORTHO05D003876 1.4e-06 56.2 69 52.2
SalBow6G5510 Salvia bowleyana HOM05D001810 ORTHO05D003876 1.4e-06 56.2 74 51.4
Aa31LG7G1260 Aethionema arabicum HOM05D001810 ORTHO05D003876 1.9e-06 55.8 79 45.6
Sopen08g002120 Solanum pennellii HOM05D001810 ORTHO05D003876 1.9e-06 55.8 71 54.9
Lsat_1_v5_gn_3_32561 Lactuca sativa HOM05D001810 ORTHO05D003876 2.4e-06 55.5 76 52.6
Glyma.07G002500 Glycine max HOM05D001810 ORTHO05D003876 3.2e-06 55.1 67 53.7
MSTRG.24617 Avicennia marina HOM05D001810 ORTHO05D003876 4.2e-06 54.7 76 50.0
CARHR017280 Cardamine hirsuta HOM05D001810 ORTHO05D003876 4.2e-06 54.7 70 47.1
Os02g0727500 Oryza sativa ssp. japonica HOM05D001810 ORTHO05D003876 4.2e-06 54.7 65 49.2
EL10Ac2g03718 Beta vulgaris HOM05D001810 ORTHO05D003876 5.4e-06 54.3 47 59.6
CiPaw.07G214500 Carya illinoinensis HOM05D001810 ORTHO05D003876 5.4e-06 54.3 69 53.6
BcaB02g06674 Brassica carinata HOM05D001810 ORTHO05D003876 7.1e-06 53.9 67 49.3
Ca_20968_v3 Cicer arietinum L. HOM05D001810 ORTHO05D003876 9.3e-06 53.5 77 51.9


User provided reference genes

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