Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.6e-304 1046.2 532 100.0
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.3e-295 1017.7 532 97.4
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-294 1015.8 532 97.2
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.2e-291 1005.0 551 93.8
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-279 966.1 532 93.4
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.5e-268 929.1 586 83.1
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.5e-234 815.5 558 75.3
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.7e-232 807.4 539 80.1
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.7e-222 776.2 544 74.4
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.4e-216 756.5 561 70.6
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 3.0e-216 755.4 538 73.6
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 1.4e-208 729.9 556 67.6
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 3.0e-208 728.8 554 67.7
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.2e-208 728.0 530 69.6
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.7e-207 724.5 568 66.4
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.3e-206 723.4 557 68.2
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.3e-206 723.4 556 67.4
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.7e-206 721.8 506 72.7
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.8e-206 721.5 525 70.1
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.8e-205 719.5 560 67.0
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.4e-205 719.2 493 73.0
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 4.1e-205 718.4 496 72.8
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.2e-204 716.8 542 68.3
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.8e-203 711.8 566 65.7
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 3.8e-203 711.8 561 66.8
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 6.5e-203 711.1 478 74.5
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.5e-202 708.0 531 68.0
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.2e-201 706.8 482 73.2
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.6e-201 705.3 558 65.9
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.0e-200 703.7 502 69.7
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.0e-200 703.7 524 68.7
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.4e-200 703.4 541 66.4
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.2e-199 700.3 578 65.1
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.4e-197 693.3 467 72.4
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.4e-197 692.6 516 67.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.0e-197 691.0 459 75.6
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 7.0e-197 691.0 440 77.3
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.2e-196 690.3 505 68.5
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 5.9e-196 688.0 467 71.9
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.3e-195 686.8 483 70.4
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.7e-195 686.4 555 64.1
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.1e-194 683.7 515 67.0
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.5e-194 683.3 467 72.6
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 5.5e-194 681.4 542 65.1
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 5.5e-194 681.4 515 66.4
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 5.5e-194 681.4 558 64.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 9.5e-194 680.6 507 68.2
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.2e-193 680.2 476 70.0
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.6e-193 679.9 519 66.1
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.1e-193 679.5 495 68.7
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.1e-193 679.5 502 67.5
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 2.1e-193 679.5 554 64.6
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 4.7e-193 678.3 531 65.7
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.8e-192 676.4 467 71.5
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 4.0e-192 675.2 532 64.5
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 4.0e-192 675.2 557 62.8
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 4.0e-192 675.2 502 67.7
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 6.8e-192 674.5 495 68.5
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 6.8e-192 674.5 467 70.4
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.5e-191 673.3 524 65.5
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 2.0e-191 672.9 581 61.4
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 3.4e-191 672.2 482 68.5
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 4.4e-191 671.8 477 68.8
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 4.4e-191 671.8 477 68.8
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.4e-191 671.8 467 71.3
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 4.4e-191 671.8 550 64.5
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 7.5e-191 671.0 485 68.7
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 9.8e-191 670.6 459 70.4
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.3e-190 670.2 456 71.7
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 4.9e-190 668.3 459 70.2
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-189 667.2 476 68.7
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.4e-189 666.8 478 68.4
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.4e-189 666.8 476 68.5
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.4e-189 666.8 447 74.0
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.4e-189 666.8 567 62.6
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.4e-189 666.0 557 62.7
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 4.1e-189 665.2 476 68.3
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 7.0e-189 664.5 512 64.6
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 7.0e-189 664.5 515 64.7
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 9.2e-189 664.1 552 63.2
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.2e-188 663.7 515 64.7
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.2e-188 663.7 448 73.7
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 7.8e-188 661.0 482 69.3
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 2.9e-187 659.1 481 67.6
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 8.6e-187 657.5 513 64.3
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.1e-186 657.1 462 69.9
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.1e-186 657.1 480 69.4
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 5.6e-186 654.8 464 70.5
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.5e-186 654.1 476 68.1
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.6e-185 653.3 598 58.4
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 2.1e-185 652.9 496 65.1
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.4e-184 650.2 508 65.9
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.8e-184 649.8 477 68.1
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.1e-184 649.0 522 64.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.5e-183 646.7 688 52.8
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 2.0e-183 646.4 530 62.6
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.8e-183 644.8 522 64.6
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.9e-182 642.5 510 64.3
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 3.7e-182 642.1 467 68.7
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 6.4e-182 641.3 438 71.5
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 8.3e-182 641.0 478 66.7
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.1e-181 640.6 518 64.1
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.1e-181 640.6 497 65.6
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 4.1e-181 638.6 450 71.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.2e-181 637.5 515 63.7
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.0e-180 636.3 514 62.8
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.5e-180 635.6 471 67.9
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.5e-180 635.6 459 67.5
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 7.8e-180 634.4 471 66.9
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 3.9e-179 632.1 562 59.1
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 7.3e-178 627.9 466 66.3
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 3.4e-175 619.0 484 64.0
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.9e-174 615.9 550 60.7
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.7e-171 606.7 590 56.4
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 9.2e-165 584.3 480 63.3
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.9e-163 578.9 463 62.2
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 3.4e-159 565.8 482 59.5
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.0e-155 552.7 295 96.6
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 2.1e-153 546.6 363 74.4
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.5e-151 540.4 366 73.2
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.4e-149 533.9 391 66.8
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.3e-145 520.8 501 56.9
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.4e-141 506.5 466 54.5
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.2e-141 506.1 342 74.0
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 6.7e-139 498.4 470 53.4
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.5e-138 497.3 362 68.5
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 3.3e-138 496.1 362 68.5
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.2e-137 491.9 469 54.2
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.1e-124 450.3 326 69.0
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 2.8e-121 439.9 399 58.9
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 2.5e-114 416.8 350 66.0
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.2e-110 403.7 289 68.2
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.1e-104 384.8 239 75.7
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.0e-99 368.2 482 44.6
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 8.8e-99 365.2 215 79.1
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.5e-98 364.4 475 43.8
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 2.0e-98 364.0 219 79.5
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 4.4e-98 362.8 272 66.5
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.6e-92 343.2 212 75.0
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.5e-85 321.2 293 58.4
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.8e-83 314.3 453 40.2
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 4.0e-83 313.2 453 40.0
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 3.5e-79 300.1 208 69.7
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 7.7e-79 298.9 280 56.8
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 2.3e-78 297.4 211 72.0
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 7.3e-77 292.4 303 53.5
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.9e-73 280.4 186 78.5
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 2.3e-67 260.8 274 49.6
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 4.9e-65 253.1 270 55.6
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 7.3e-61 239.2 271 50.2
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 8.9e-59 232.3 484 34.5
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.4e-56 223.0 187 66.8
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 7.1e-56 222.6 184 66.3
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.0e-51 206.8 177 58.8
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.6e-47 194.9 274 42.7
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.5e-47 193.7 114 78.9
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.3e-45 186.8 125 66.4
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 4.7e-44 183.3 124 68.5
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.2e-41 174.5 133 69.2
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.0e-34 151.4 125 58.4
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 9.9e-34 149.1 303 36.0
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 4.2e-32 143.7 309 34.3
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.8e-30 138.3 100 65.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.9e-29 134.8 88 69.3
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.6e-29 133.3 77 80.5
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 7.4e-29 132.9 153 50.3
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 9.6e-29 132.5 103 62.1
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.1e-27 129.0 76 78.9
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 2.2e-25 121.3 81 69.1
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 8.4e-25 119.4 64 89.1
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 8.4e-25 119.4 102 63.7
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 4.3e-21 107.1 63 76.2
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 6.9e-19 99.8 87 55.2
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 1.3e-17 95.5 51 86.3
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 6.5e-17 93.2 83 59.0
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 8.4e-17 92.8 80 61.2
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 4.2e-16 90.5 61 70.5
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 5.5e-16 90.1 57 68.4
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 5.5e-16 90.1 80 48.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 2.1e-15 88.2 65 61.5
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 1.0e-14 85.9 48 87.5
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.5e-13 82.0 162 34.6
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 7.4e-13 79.7 45 80.0
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.9e-10 70.1 111 41.4
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.6e-07 62.0 155 30.3


User provided reference genes

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