Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1604.3 869 100.0
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1581.6 884 97.4
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1580.1 883 97.4
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1578.5 869 98.5
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1577.8 884 97.2
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1572.0 884 97.1
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1366.7 889 83.8
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1295.8 881 79.9
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1292.3 904 78.3
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1270.0 882 75.1
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1262.3 886 74.8
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1257.7 889 74.5
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1251.5 882 73.6
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1249.6 862 75.5
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1244.6 891 73.8
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1240.7 888 72.7
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1240.3 889 73.5
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1236.5 892 74.9
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1233.4 878 72.8
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1231.1 887 74.1
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1230.3 884 73.6
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1230.3 884 73.1
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1229.5 880 73.2
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1228.8 894 72.3
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1226.8 885 73.2
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1226.8 896 72.0
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1226.5 922 72.6
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 872 73.4
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1221.8 884 75.8
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1221.5 914 71.3
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1219.9 914 71.2
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1214.5 878 72.1
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 878 71.8
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1210.7 888 71.8
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1209.1 901 70.6
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1206.4 930 69.7
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1205.7 904 71.2
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1204.9 912 72.6
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 888 70.9
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1201.4 876 71.7
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1198.3 888 70.7
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1197.2 894 71.9
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1197.2 883 70.6
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 863 71.7
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1192.2 915 69.9
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1189.1 902 70.2
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1189.1 884 71.2
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1188.7 897 70.8
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 885 70.6
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1186.4 896 69.9
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 908 70.0
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 888 72.6
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1185.2 883 70.0
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1182.9 881 69.9
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1181.8 922 70.5
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1181.4 884 71.6
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 883 69.6
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1176.0 876 70.5
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1176.0 889 69.7
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1175.6 922 68.2
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1173.7 883 72.3
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1172.5 882 69.7
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1170.2 904 68.4
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1164.8 880 69.5
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1161.7 880 69.3
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1160.2 910 67.6
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 867 72.2
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1158.7 720 89.0
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1157.1 891 69.4
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1156.7 884 66.9
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1152.9 899 68.6
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1149.4 934 66.4
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1149.0 925 67.4
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1149.0 925 67.4
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1149.0 880 68.8
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1146.7 906 70.6
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1146.7 911 66.3
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1145.2 876 70.1
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1140.6 926 69.4
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1140.6 883 68.1
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1138.6 858 69.9
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1138.6 892 70.9
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1134.0 920 69.5
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1133.6 910 67.5
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1132.9 877 71.8
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1131.3 905 67.3
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1127.5 891 70.6
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1126.7 880 68.5
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1125.9 902 67.5
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1124.0 907 66.3
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1124.0 881 70.3
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 838 70.3
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 881 67.7
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1116.3 925 65.0
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1108.2 860 66.3
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1104.0 830 70.7
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1101.3 835 70.7
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1099.3 895 69.5
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1098.2 856 71.1
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1091.6 820 68.3
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1090.1 838 68.7
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1085.1 933 62.6
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1082.4 888 65.1
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1082.4 985 61.5
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1081.6 881 64.7
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 2.4e-311 1072.0 1004 62.5
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 7.1e-311 1070.5 884 65.3
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 5.1e-306 1054.3 867 65.5
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 9.1e-303 1043.5 777 68.6
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 1.2e-302 1043.1 890 63.8
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 8.0e-299 1030.4 865 62.9
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 4.1e-287 991.5 881 59.7
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 9.8e-273 943.7 721 68.1
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 3.1e-271 938.7 901 59.2
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 3.3e-268 928.7 731 66.5
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 2.0e-265 919.5 715 69.0
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 3.0e-261 905.6 954 55.8
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.2e-257 893.6 879 58.1
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 2.4e-255 885.9 595 75.0
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 4.3e-252 875.2 503 84.3
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.6e-251 873.2 859 54.6
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.1e-244 850.5 908 55.7
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 2.2e-232 809.7 862 54.2
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 8.1e-227 791.2 685 61.9
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 2.0e-185 653.7 671 55.7
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 2.9e-176 623.2 557 63.6
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.6e-172 610.1 336 85.7
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 1.4e-162 577.8 372 75.0
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.0e-161 573.9 382 73.6
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 4.2e-159 566.2 447 67.8
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.4e-154 551.2 339 77.6
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 9.2e-154 548.5 538 59.1
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.9e-151 540.8 359 73.5
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 6.8e-133 479.2 695 43.0
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 4.0e-125 453.4 874 35.6
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.2e-124 451.8 291 74.2
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 2.0e-116 424.5 994 34.0
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 9.6e-111 405.6 525 50.1
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.7e-105 387.5 452 54.6
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 6.5e-99 366.3 297 64.0
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 5.5e-98 363.2 572 42.8
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 1.0e-88 332.4 1026 28.9
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 2.8e-86 324.3 167 93.4
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.8e-85 321.6 375 56.5
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.8e-45 188.7 132 80.3
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 5.0e-43 180.6 326 39.0
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 6.6e-43 180.3 102 82.4
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 4.3e-42 177.6 86 100.0
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 4.6e-36 157.5 107 68.2
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.8e-36 156.8 105 72.4
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-34 152.5 94 81.9
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 1.6e-33 149.1 94 80.9
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 4.7e-33 147.5 105 70.5
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.6e-20 105.9 77 70.1
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.1e-18 99.8 61 75.4
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.1e-16 93.2 98 62.2
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 7.1e-13 80.5 57 66.7
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.6e-12 77.8 45 77.8
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.3e-10 71.6 53 69.8
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 6.2e-09 67.4 58 60.3
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.4e-08 66.2 52 63.5
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 1.5e-07 62.8 41 65.9
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 2.0e-07 62.4 66 43.9


User provided reference genes

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