Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.2e-272 942.6 477 100.0
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.5e-178 627.5 335 92.5
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 9.4e-169 597.4 333 90.1
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.9e-105 387.1 282 72.0
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.8e-79 300.8 359 50.1
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 4.8e-64 249.6 345 47.5
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.7e-53 214.5 310 44.8
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 3.1e-47 193.7 388 36.9
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 4.1e-39 166.8 434 31.3
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.5e-36 157.5 460 29.8
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 8.0e-35 152.5 326 32.8
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 8.0e-35 152.5 318 35.2
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 8.9e-34 149.1 264 38.6
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.2e-33 148.7 326 32.2
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 2.0e-33 147.9 318 34.6
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.3e-32 145.2 322 32.9
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.9e-32 144.1 318 33.6
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 3.7e-32 143.7 326 32.2
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 8.3e-32 142.5 317 31.9
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 8.3e-32 142.5 316 32.6
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.1e-31 142.1 298 32.9
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.4e-31 141.7 317 32.5
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.4e-31 141.7 320 34.4
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-31 141.7 315 31.4
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.9e-31 141.4 326 30.1
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 2.4e-31 141.0 276 33.7
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 2.4e-31 141.0 278 33.8
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.1e-31 140.2 321 32.1
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 4.1e-31 140.2 277 32.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 9.2e-31 139.0 320 34.1
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 2.7e-30 137.5 322 31.4
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.5e-30 137.1 317 30.0
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.5e-30 137.1 279 32.6
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 3.5e-30 137.1 269 33.1
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 4.6e-30 136.7 317 31.2
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 7.8e-30 136.0 270 32.6
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 7.8e-30 136.0 317 31.5
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.3e-29 135.2 140 50.0
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.7e-29 134.8 182 42.9
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.0e-29 134.0 142 48.6
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 3.0e-29 134.0 155 48.4
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 3.0e-29 134.0 276 31.2
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.9e-29 133.7 321 31.5
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 3.9e-29 133.7 164 45.1
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.9e-29 133.7 269 31.2
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.9e-29 133.7 319 32.6
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 5.0e-29 133.3 317 30.0
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 5.0e-29 133.3 313 31.9
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.0e-29 133.3 134 50.7
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 6.6e-29 132.9 317 30.9
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 8.6e-29 132.5 134 51.5
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 8.6e-29 132.5 269 30.9
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.6e-29 132.5 269 30.9
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.1e-28 132.1 134 48.5
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.1e-28 132.1 134 49.3
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 1.1e-28 132.1 318 31.1
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.5e-28 131.7 311 32.8
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.5e-28 131.7 132 51.5
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.9e-28 131.3 326 28.5
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.9e-28 131.3 279 33.0
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.5e-28 131.0 317 29.3
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 2.5e-28 131.0 132 52.3
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 2.5e-28 131.0 317 30.9
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.5e-28 131.0 134 49.3
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 3.3e-28 130.6 276 31.2
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.3e-28 130.6 281 33.1
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.3e-28 130.2 321 29.6
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 4.3e-28 130.2 166 44.6
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 4.3e-28 130.2 276 31.5
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 4.3e-28 130.2 268 32.1
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 4.3e-28 130.2 134 49.3
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.6e-28 129.8 134 50.0
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 5.6e-28 129.8 276 32.2
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 5.6e-28 129.8 134 49.3
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 5.6e-28 129.8 150 46.0
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 7.3e-28 129.4 317 29.0
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 7.3e-28 129.4 135 48.9
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 7.3e-28 129.4 276 33.7
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 7.3e-28 129.4 276 30.1
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 7.3e-28 129.4 180 42.8
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 9.5e-28 129.0 134 50.7
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 9.5e-28 129.0 139 49.6
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 9.5e-28 129.0 139 49.6
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 9.5e-28 129.0 323 31.0
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.2e-27 128.6 134 50.0
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.2e-27 128.6 170 43.5
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.2e-27 128.6 269 30.5
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.6e-27 127.1 132 49.2
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.6e-27 127.1 269 29.7
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 4.7e-27 126.7 132 47.7
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 6.2e-27 126.3 269 30.5
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 6.2e-27 126.3 167 41.9
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 6.2e-27 126.3 168 43.5
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 8.1e-27 125.9 132 50.0
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.1e-26 125.6 132 49.2
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.1e-26 125.6 181 44.2
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.1e-26 125.6 273 33.0
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.8e-26 124.8 270 31.9
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 2.3e-26 124.4 321 29.9
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 3.1e-26 124.0 317 31.9
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 3.1e-26 124.0 269 32.7
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 3.1e-26 124.0 327 27.8
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 5.2e-26 123.2 134 47.0
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 6.8e-26 122.9 271 31.7
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.9e-26 122.5 134 47.0
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.5e-25 121.7 268 32.1
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.5e-25 121.7 146 45.9
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.5e-25 121.7 143 44.8
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 2.6e-25 120.9 132 48.5
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.8e-25 119.8 282 30.9
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 7.5e-25 119.4 311 28.3
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 4.9e-24 116.7 140 42.9
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 4.9e-24 116.7 140 43.6
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 6.4e-24 116.3 140 42.9
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 6.4e-24 116.3 139 43.9
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 6.4e-24 116.3 272 29.0
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 8.3e-24 115.9 322 31.7
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.4e-23 115.2 154 40.9
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.4e-23 115.2 139 43.9
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.9e-23 114.8 140 42.1
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.9e-23 114.8 269 29.4
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 2.4e-23 114.4 314 27.7
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 3.2e-23 114.0 140 42.9
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 3.2e-23 114.0 140 42.1
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 4.1e-23 113.6 140 42.1
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 5.4e-23 113.2 153 43.1
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 7.1e-23 112.8 140 41.4
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 7.1e-23 112.8 269 30.1
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 9.2e-23 112.5 161 41.6
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.6e-22 111.7 140 43.6
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 2.1e-22 111.3 155 40.0
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 3.5e-22 110.5 135 44.4
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.3e-21 108.6 162 41.4
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 1.3e-21 108.6 131 45.8
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 5.1e-21 106.7 146 41.8
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 6.6e-21 106.3 146 41.8
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 1.5e-20 105.1 300 27.3
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.1e-19 101.3 325 29.5
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 1.1e-18 99.0 265 26.8
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 2.4e-18 97.8 172 37.2
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.0e-17 94.7 110 46.4
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.2e-16 91.3 165 34.5
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 3.8e-16 90.5 174 35.6
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 4.9e-16 90.1 161 37.3
FAN17G0076 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.4e-15 88.6 85 54.1
FvH4_4g01090 Fragaria vesca HOM05D028185 ORTHO05D025555 1.9e-15 88.2 126 42.9
FvH4_6g48772 Fragaria vesca HOM05D004427 ORTHO05D197645 3.5e-14 84.0 143 49.0
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.3e-13 82.0 160 35.0
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.9e-12 78.2 83 51.8
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-12 78.2 95 43.2
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 5.6e-12 76.6 83 43.4
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 5.6e-12 76.6 176 33.0
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-11 75.5 83 51.8
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 2.1e-11 74.7 139 33.1
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.8e-10 71.6 80 41.2
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 3.1e-10 70.9 194 24.7
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.4e-09 67.4 53 54.7
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 4.9e-08 63.5 102 33.3
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 4.9e-08 63.5 102 33.3
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.9e-08 63.5 66 45.5
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.9e-08 63.5 76 40.8


User provided reference genes

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