Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2188.3 1108 100.0
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2136.7 1154 95.1
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 2092.4 1108 96.4
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2092.0 1188 89.6
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2063.5 1196 89.5
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1721.1 1112 79.8
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1720.7 910 96.0
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1679.1 1122 77.5
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1658.3 1113 77.1
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1607.8 928 89.1
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1508.8 1118 69.7
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1466.8 1123 68.1
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1441.8 1122 67.0
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1441.4 1123 67.3
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1432.2 1115 66.5
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1429.5 1115 67.1
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1412.1 1118 66.8
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1410.6 1122 64.5
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1407.1 1126 65.5
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1406.3 1123 66.1
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1402.5 1115 66.3
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1384.0 1121 64.8
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1382.1 1134 64.9
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1380.9 1122 65.9
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1380.5 1123 65.0
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1375.9 1146 63.9
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1372.8 1122 64.1
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1368.6 1119 64.2
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1367.8 1117 64.5
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1364.7 1133 64.3
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1357.8 1122 63.7
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1354.7 1120 64.2
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1354.0 1180 62.0
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1352.4 1117 63.7
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1350.5 1119 63.7
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1342.0 1116 63.4
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1340.5 1116 63.1
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1337.4 1087 64.2
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1333.9 1118 63.6
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1332.8 1121 63.3
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1327.8 1121 63.0
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1325.1 1122 62.9
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1321.2 1121 62.4
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1319.3 1121 62.4
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1317.0 1118 62.6
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1308.9 1117 62.1
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1305.4 1123 62.4
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1300.4 1136 61.8
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1297.7 1089 62.4
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1294.3 1124 61.2
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1288.5 1120 61.0
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1283.1 1117 60.9
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1258.0 1120 59.0
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1251.5 933 70.1
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1250.0 1176 58.6
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1249.2 1138 60.7
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1244.6 1132 60.6
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1243.4 1147 59.0
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1243.0 1122 60.0
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1233.8 1115 58.9
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1232.2 1121 59.2
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1213.0 1119 58.0
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1213.0 1117 58.0
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1211.1 1116 57.7
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1210.7 1115 56.6
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1210.3 1116 58.2
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1210.3 1114 58.8
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1208.4 1117 57.9
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1207.6 1112 57.9
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1207.6 1113 58.0
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1207.2 1126 59.2
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1206.8 1114 58.8
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1206.0 1115 58.2
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1206.0 1116 58.1
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1206.0 1115 58.2
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1204.9 1133 57.4
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1203.7 1124 57.8
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1199.9 1181 56.4
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1199.1 1125 58.0
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1199.1 1116 58.6
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1198.7 1137 55.8
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1196.4 1113 58.2
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1179.9 1112 56.0
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1178.7 1115 56.7
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1171.0 1178 55.3
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1167.1 1116 56.3
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1163.3 1117 57.4
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1160.6 1111 56.6
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1150.2 1122 54.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1147.1 1103 55.5
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1135.9 1109 56.3
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1119.4 956 60.7
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1109.0 1115 54.9
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1108.2 900 63.8
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1100.9 940 61.0
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 5.8e-310 1067.8 1122 51.5
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 1.3e-306 1056.6 1154 51.5
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 5.7e-302 1041.2 1086 51.7
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 4.3e-297 1025.0 1118 51.1
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 1.8e-295 1019.6 1123 49.2
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 1.6e-283 979.9 1130 48.8
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 4.6e-275 951.8 939 54.5
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 6.9e-271 937.9 858 58.3
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 6.2e-264 914.8 1224 45.8
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.9e-252 876.7 758 61.5
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 1.1e-217 761.1 1183 39.8
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 3.0e-210 736.5 1190 39.4
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 2.8e-192 676.8 1002 40.6
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.0e-186 658.3 578 60.0
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 2.8e-179 633.6 461 69.2
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.6e-166 591.3 667 50.2
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.7e-149 534.6 769 43.2
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 4.6e-142 510.0 466 59.7
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 3.9e-141 506.9 349 74.5
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.3e-131 475.3 1113 32.0
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 5.7e-124 449.9 320 70.0
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 4.8e-99 367.1 222 77.0
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.5e-87 328.9 485 42.1
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.5e-84 318.9 436 45.2
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 3.4e-76 291.2 295 54.2
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 1.4e-74 285.8 192 82.8
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 4.7e-70 270.8 910 26.5
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 3.1e-69 268.1 192 76.0
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 9.2e-66 256.5 163 69.9
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 1.2e-65 256.1 147 88.4
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.4e-60 238.0 144 71.5
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 6.4e-59 233.8 189 56.6
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 2.3e-56 225.3 715 27.7
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 4.7e-54 217.6 692 26.0
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 3.5e-49 201.4 174 60.3
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.8e-45 189.1 221 45.2
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 2.9e-43 181.8 781 24.1
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.3e-35 156.4 217 41.5
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 2.2e-35 155.6 147 57.1
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 5.1e-32 144.4 209 38.8
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 6.6e-32 144.1 114 74.6
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 8.1e-30 137.1 112 76.8
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 1.3e-27 129.8 387 28.2
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 8.1e-22 110.5 206 35.0
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.1e-21 110.2 94 58.5
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 3.8e-19 101.7 75 60.0
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 6.2e-14 84.3 57 63.2
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 3.4e-12 78.6 201 31.8
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 3.8e-11 75.1 85 48.2
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 1.1e-10 73.6 93 46.2
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 2.3e-08 65.9 49 65.3
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 5.1e-08 64.7 41 68.3
Lalb_Chr02g0153261 Lupinus albus HOM05D004363 ORTHO05D005110 4.3e-07 61.6 58 55.2
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 7.4e-07 60.8 76 63.2


User provided reference genes

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