Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.2e-207 724.2 369 100.0
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 4.3e-193 677.9 351 98.6
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.3e-193 677.2 351 98.3
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.6e-192 674.9 351 98.3
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 2.8e-176 622.1 351 90.9
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 5.4e-156 554.7 358 80.7
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 2.4e-148 529.3 357 77.0
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 5.6e-145 518.1 360 75.0
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 2.7e-139 499.2 362 73.2
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 6.0e-139 498.0 363 72.7
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 3.1e-135 485.7 360 71.9
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 4.9e-133 478.4 357 70.0
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 2.3e-130 469.5 362 68.2
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 5.9e-126 454.9 368 66.3
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 2.7e-123 446.0 371 64.7
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 2.3e-122 443.0 362 64.6
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 2.3e-122 443.0 361 66.2
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 4.3e-121 438.7 361 65.1
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 2.4e-119 433.0 359 64.1
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.2e-118 430.6 359 63.0
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.5e-118 430.3 359 63.2
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.0e-118 429.9 373 60.1
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 4.5e-118 428.7 354 64.1
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 4.5e-118 428.7 366 63.1
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 6.5e-117 424.9 363 62.0
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 5.5e-116 421.8 363 61.7
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.2e-115 420.6 373 60.3
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 1.6e-115 420.2 364 63.2
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 8.8e-114 414.5 364 62.9
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 4.1e-111 405.6 362 64.1
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.9e-110 401.7 374 59.9
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.9e-110 401.7 374 59.9
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 1.3e-109 400.6 361 60.9
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 5.0e-109 398.7 370 61.9
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 2.5e-108 396.4 355 59.4
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 1.4e-106 390.6 354 61.9
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 4.4e-105 385.6 355 58.6
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.4e-105 384.8 369 56.6
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 3.7e-104 382.5 359 57.4
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 4.8e-104 382.1 358 58.7
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 6.3e-104 381.7 354 58.2
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 6.3e-104 381.7 359 57.9
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 8.2e-104 381.3 355 59.7
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 3.1e-103 379.4 362 57.2
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 7.0e-103 378.3 351 59.0
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 7.0e-103 378.3 361 57.9
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 4.5e-102 375.6 375 56.3
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 5.9e-102 375.2 356 57.9
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.7e-101 373.6 359 56.0
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 5.0e-101 372.1 357 58.3
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 2.7e-99 366.3 356 56.5
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 9.7e-97 357.8 364 55.2
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.3e-96 357.5 351 56.4
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 1.3e-96 357.5 352 57.1
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 2.8e-96 356.3 351 57.5
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 2.4e-95 353.2 352 56.0
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 9.1e-95 351.3 357 56.9
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 1.2e-94 350.9 353 56.7
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 1.6e-94 350.5 351 57.0
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 1.3e-93 347.4 351 53.8
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 1.6e-91 340.5 364 52.5
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 3.6e-91 339.3 364 51.9
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.8e-88 329.7 355 53.2
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 8.3e-88 328.2 357 54.3
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.1e-87 327.8 368 52.4
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 9.1e-87 324.7 375 48.8
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.2e-84 315.8 374 50.3
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 9.5e-84 314.7 354 51.1
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.6e-83 313.9 358 50.3
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 2.1e-83 313.5 355 51.5
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 2.8e-83 313.2 374 49.5
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 8.0e-83 311.6 358 50.0
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 1.4e-82 310.8 359 51.3
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 1.4e-82 310.8 358 50.3
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.8e-82 310.5 357 51.0
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 4.4e-81 305.8 356 49.4
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 5.7e-81 305.4 355 53.2
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 2.2e-80 303.5 384 47.9
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 3.7e-80 302.8 352 51.4
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.8e-79 300.4 377 47.2
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.1e-79 299.3 359 48.2
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 3.5e-78 296.2 380 47.1
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 4.5e-78 295.8 377 47.7
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 4.5e-78 295.8 377 47.7
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-77 293.9 368 50.3
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 1.7e-77 293.9 358 48.6
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 3.9e-77 292.7 379 45.9
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 1.9e-76 290.4 397 44.8
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.6e-76 288.9 357 49.9
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 7.3e-76 288.5 384 45.8
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.6e-75 287.3 351 47.9
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 2.1e-75 287.0 356 48.3
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 3.6e-75 286.2 370 48.4
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 3.6e-75 286.2 356 47.8
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.4e-73 279.3 353 45.9
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 5.8e-73 278.9 391 44.8
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.3e-72 277.7 255 58.8
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 1.7e-72 277.3 186 71.0
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 4.9e-72 275.8 363 45.5
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 4.9e-72 275.8 359 46.0
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 1.9e-71 273.9 186 69.9
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 1.9e-71 273.9 316 51.6
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 3.2e-71 273.1 380 47.6
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.0e-71 271.9 358 47.2
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.8e-70 268.5 363 48.2
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 2.3e-69 266.9 378 44.2
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.0e-69 265.8 370 43.8
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 3.1e-66 256.5 394 41.9
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 3.1e-66 256.5 269 51.7
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.1e-66 256.5 173 71.1
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.1e-66 256.5 355 47.0
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.0e-66 256.1 238 57.1
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 8.9e-66 255.0 360 45.8
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 8.9e-66 255.0 360 45.8
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 1.2e-65 254.6 354 44.1
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 4.4e-65 252.7 218 62.4
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 4.4e-65 252.7 235 58.7
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 4.9e-64 249.2 131 94.7
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 8.3e-64 248.4 354 43.2
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.4e-63 247.7 218 61.5
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 7.1e-63 245.4 193 61.1
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-59 234.6 340 43.2
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-59 234.6 364 45.6
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.1e-58 231.5 173 64.7
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 2.6e-57 226.9 295 48.8
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 9.2e-55 218.4 357 40.3
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 4.6e-54 216.1 317 46.7
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-52 211.5 224 50.9
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.9e-48 196.8 356 38.5
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.0e-45 188.3 279 47.3
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.3e-45 187.2 150 64.7
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-44 184.5 173 57.2
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 1.9e-31 141.0 351 33.0
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 7.1e-31 139.0 196 46.4
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.9e-28 131.0 159 45.9
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 2.5e-28 130.6 104 59.6
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.9e-26 122.5 125 52.8
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.8e-24 116.7 122 52.5
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.4e-23 114.8 63 92.1
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.3e-21 107.5 80 65.0
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-20 105.1 117 46.2
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.7e-19 100.1 50 98.0
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.8e-16 90.1 59 76.3
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 7.1e-15 85.9 51 78.4
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 3.5e-14 83.6 86 46.5
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-13 81.6 66 65.2
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.1e-13 79.7 51 72.5
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.1e-13 79.7 51 72.5
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.4e-10 71.6 88 45.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.4e-10 70.9 35 94.3
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 1.3e-08 65.1 270 28.5
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 2.2e-08 64.3 265 29.1
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 6.5e-08 62.8 274 28.1
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 8.5e-08 62.4 274 26.3
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 8.5e-08 62.4 273 30.4
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 1.1e-07 62.0 262 29.0
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 1.9e-07 61.2 259 30.9
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 3.2e-07 60.5 282 29.8
Prupe.1G147900 Prunus persica HOM05D002762 ORTHO05D004643 3.2e-07 60.5 271 28.4
CAN.G48.42 Capsicum annuum HOM05D002503 ORTHO05D002810 5.5e-07 59.7 386 26.9
Sed0012643 Sechium edule HOM05D002503 ORTHO05D002810 5.5e-07 59.7 385 25.2
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 7.2e-07 59.3 155 31.0
MD16G1180300 Malus domestica HOM05D002762 ORTHO05D004643 9.4e-07 58.9 261 28.0
VMungo0540G1770 Vigna mungo HOM05D002762 ORTHO05D004643 9.4e-07 58.9 288 26.4
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 1.2e-06 58.5 288 26.7
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 1.2e-06 58.5 263 26.6
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 1.2e-06 58.5 271 28.4
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 1.6e-06 58.2 341 24.9
Sopen03g024090 Solanum pennellii HOM05D002503 ORTHO05D002810 1.6e-06 58.2 388 25.8
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 2.1e-06 57.8 266 27.8
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 2.1e-06 57.8 267 27.0
Solyc03g093310.3 Solanum lycopersicum HOM05D002503 ORTHO05D002810 2.1e-06 57.8 388 25.8
Glyma.14G200300 Glycine max HOM05D002125 ORTHO05D002105 2.7e-06 57.4 214 28.0
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 2.7e-06 57.4 267 27.0
CsaV3_3G033360 Cucumis sativus L. HOM05D002125 ORTHO05D002105 3.6e-06 57.0 194 27.8
GSVIVG01014046001 Vitis vinifera HOM05D002503 ORTHO05D002810 3.6e-06 57.0 386 27.2
Eucgr.B01185 Eucalyptus grandis HOM05D002762 ORTHO05D004643 4.6e-06 56.6 272 26.8
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 6.1e-06 56.2 347 25.1
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 6.1e-06 56.2 271 27.3
CANSAT78G1359 Cannabis sativa HOM05D002762 ORTHO05D004643 7.9e-06 55.8 261 27.6
RcHm_v2.0_Chr4g0419291 Rosa chinensis HOM05D002762 ORTHO05D004643 7.9e-06 55.8 261 29.1


User provided reference genes

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