Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1234.2 696 100.0
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1194.9 696 96.3
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 0.0e+00 1192.9 696 96.1
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1174.1 696 93.8
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1166.0 698 94.0
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 0.0e+00 1130.9 705 92.2
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 8.7e-272 940.3 716 79.1
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 4.3e-271 937.9 716 79.3
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 1.4e-261 906.4 714 78.4
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 2.4e-253 879.0 704 77.8
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 5.0e-211 738.4 605 73.9
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.1e-210 737.3 719 66.8
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 3.7e-206 722.2 711 66.9
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 2.4e-205 719.5 585 73.8
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.1e-205 719.2 699 68.2
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 1.6e-204 716.8 588 73.6
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 5.0e-203 711.8 750 65.9
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.1e-202 710.7 737 65.0
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.9e-202 709.9 536 73.9
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.3e-202 709.1 522 74.3
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 4.2e-202 708.8 733 66.0
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.2e-200 701.8 522 73.8
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 8.9e-200 701.0 518 73.4
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.2e-199 700.7 721 63.8
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 3.4e-199 699.1 518 73.4
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 2.2e-198 696.4 724 63.4
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 4.9e-198 695.3 532 72.0
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 8.3e-198 694.5 742 63.9
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 2.4e-197 693.0 529 69.2
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 5.4e-197 691.8 704 61.1
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 7.0e-197 691.4 702 63.2
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 9.2e-197 691.0 717 60.7
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.7e-195 686.8 519 71.3
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 5.0e-195 685.3 708 62.7
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.9e-194 683.3 524 73.3
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 7.3e-194 681.4 524 73.1
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.4e-192 677.2 526 72.8
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 5.2e-192 675.2 537 69.5
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 5.2e-192 675.2 532 69.5
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 2.9e-190 669.5 539 69.8
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.6e-188 663.7 704 61.5
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 3.0e-187 659.4 708 62.1
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 5.6e-186 655.2 515 71.3
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.4e-184 650.6 449 74.4
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.8e-184 650.2 534 68.0
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.2e-183 647.5 653 67.5
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 1.5e-183 647.1 517 67.1
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.5e-183 647.1 525 65.5
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 3.4e-183 646.0 449 73.9
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 5.8e-183 645.2 521 67.0
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 7.5e-183 644.8 531 68.0
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 2.2e-182 643.3 522 66.9
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.9e-182 642.9 712 61.9
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 4.9e-182 642.1 765 60.1
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 4.1e-181 639.0 727 61.6
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 9.2e-181 637.9 712 62.9
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 4.6e-180 635.6 706 60.8
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.3e-179 634.0 524 68.9
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 2.5e-178 629.8 718 61.6
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 9.5e-178 627.9 551 64.2
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 7.5e-175 618.2 490 68.2
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.7e-174 615.9 402 77.1
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 8.3e-174 614.8 710 60.0
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 1.9e-173 613.6 725 57.7
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.4e-173 613.2 542 65.9
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 4.1e-173 612.5 708 62.1
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 2.7e-172 609.8 531 66.3
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 4.6e-172 609.0 529 66.9
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.0e-171 607.8 717 56.8
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.7e-171 607.1 752 58.9
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.5e-170 604.0 524 62.4
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.9e-170 603.6 542 62.0
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.9e-170 603.6 720 56.0
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 3.1e-168 596.3 495 65.5
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 5.2e-168 595.5 520 62.9
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 5.2e-168 595.5 420 72.1
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 2.0e-167 593.6 721 57.1
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 2.2e-166 590.1 422 71.3
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 2.9e-166 589.7 720 54.9
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 3.8e-166 589.3 528 65.5
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 6.4e-166 588.6 450 69.1
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 6.4e-166 588.6 394 75.4
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.1e-165 587.8 722 55.7
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 3.2e-165 586.3 445 69.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 6.0e-164 582.0 450 67.3
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 1.3e-163 580.9 597 61.8
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 3.0e-163 579.7 674 57.3
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.5e-162 577.4 710 57.7
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 2.4e-160 570.1 454 67.4
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 4.0e-160 569.3 700 57.7
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 9.9e-159 564.7 528 61.2
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 3.0e-155 553.1 592 65.5
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 8.7e-155 551.6 440 65.0
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 4.3e-154 549.3 434 65.7
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 2.1e-153 547.0 723 55.7
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.1e-153 547.0 717 53.1
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 3.4e-151 539.7 532 58.1
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.7e-150 537.3 517 59.4
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.2e-150 537.0 726 53.0
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 6.4e-150 535.4 467 61.5
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.4e-149 534.3 518 61.4
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 3.5e-148 529.6 391 68.8
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 1.4e-144 517.7 518 56.6
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 5.3e-144 515.8 451 62.3
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.4e-143 513.1 528 59.1
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 9.9e-143 511.5 460 60.9
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 4.9e-142 509.2 513 57.1
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.4e-141 507.7 458 59.8
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 2.0e-135 487.3 407 62.2
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.1e-130 471.5 378 65.3
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.2e-124 451.4 440 58.0
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 1.0e-123 448.4 572 57.7
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.0e-119 434.1 327 66.7
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 8.0e-108 395.6 448 51.6
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.0e-107 395.2 359 59.3
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 8.8e-107 392.1 350 61.1
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 8.2e-105 385.6 357 57.7
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 2.2e-102 377.5 426 51.2
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.2e-100 371.7 415 50.4
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.5e-98 362.5 441 49.7
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.6e-92 344.7 214 80.4
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 5.7e-90 336.3 484 47.1
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 5.4e-88 329.7 296 66.9
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.0e-87 327.8 452 61.5
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 9.2e-80 302.4 497 42.7
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 7.3e-77 292.7 370 46.2
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.6e-76 290.4 401 46.6
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.9e-69 268.1 193 71.5
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.1e-67 262.3 210 65.2
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 4.4e-50 203.8 192 56.2
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 8.7e-46 189.5 521 30.3
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 7.3e-45 186.4 221 49.3
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 2.0e-42 178.3 189 57.7
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 6.0e-39 166.8 169 55.0
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.0e-34 151.8 125 61.6
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 5.8e-34 150.2 125 60.8
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 5.1e-30 137.1 397 29.7
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 2.8e-28 131.3 95 66.3
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.0e-25 122.9 120 60.0
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 3.9e-22 110.9 88 62.5
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 1.9e-21 108.6 355 27.6
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 7.4e-21 106.7 319 46.4
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.3e-20 105.9 351 49.9
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.7e-17 95.5 157 42.7
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 3.5e-15 87.8 123 43.1
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 2.5e-13 81.6 106 45.3
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 5.7e-13 80.5 161 36.6
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 6.9e-11 73.6 336 45.8
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 3.4e-10 71.2 96 45.8
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 4.5e-10 70.9 114 41.2
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 5.5e-08 63.9 77 46.8
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 1.4e-06 59.3 71 47.9


User provided reference genes

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