Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 0.0e+00 1229.2 616 100.0
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 0.0e+00 1152.9 625 94.2
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 0.0e+00 1144.8 616 94.5
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 0.0e+00 1108.2 616 91.6
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 3.7e-282 974.5 615 79.7
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 1.7e-271 939.1 567 82.9
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 1.6e-269 932.6 614 75.2
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 2.7e-269 931.8 615 76.7
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 1.8e-268 929.1 617 75.7
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 2.3e-268 928.7 617 75.7
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 2.4e-265 918.7 616 75.5
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 1.2e-264 916.4 617 74.4
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 9.4e-262 906.7 621 73.3
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 3.6e-261 904.8 583 77.4
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 1.0e-260 903.3 622 73.2
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 2.3e-260 902.1 616 72.2
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 2.6e-259 898.7 619 72.2
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 5.7e-259 897.5 616 73.4
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 1.7e-258 896.0 620 73.7
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 2.4e-257 892.1 606 73.8
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 3.1e-257 891.7 610 72.6
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 9.1e-257 890.2 616 72.1
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 1.2e-256 889.8 616 72.1
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 3.5e-256 888.3 619 72.2
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 1.3e-255 886.3 616 72.7
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 8.5e-255 883.6 619 71.2
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 8.5e-255 883.6 619 72.1
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.1e-254 883.2 621 72.0
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 1.9e-254 882.5 619 72.1
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 5.5e-254 880.9 696 65.5
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 7.2e-254 880.6 602 72.3
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 2.7e-253 878.6 616 72.1
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 8.0e-253 877.1 586 73.7
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 1.8e-252 875.9 583 74.1
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 4.0e-252 874.8 582 73.7
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 6.8e-252 874.0 630 70.8
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 4.4e-251 871.3 582 73.4
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 4.4e-251 871.3 613 70.6
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 2.8e-250 868.6 614 71.2
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 2.4e-249 865.5 612 70.4
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 7.0e-249 864.0 617 70.5
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 1.3e-247 859.8 620 69.7
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 1.1e-246 856.7 584 72.3
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 3.2e-246 855.1 616 68.5
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 2.7e-245 852.0 587 70.9
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.4e-244 849.7 624 66.8
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.4e-244 849.7 615 69.8
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 1.8e-244 849.4 616 68.0
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.8e-244 849.4 587 70.7
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 1.8e-244 849.4 616 68.0
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 3.0e-244 848.6 616 68.0
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 3.0e-244 848.6 622 70.4
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 5.2e-244 847.8 580 70.7
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 1.5e-243 846.3 616 67.7
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 1.5e-243 846.3 616 68.0
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 1.5e-243 846.3 611 68.9
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 4.4e-243 844.7 616 67.9
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 1.3e-242 843.2 582 72.2
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 2.2e-242 842.4 616 67.7
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 1.4e-241 839.7 630 68.4
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 7.0e-241 837.4 616 67.0
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 1.2e-240 836.6 616 66.4
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 3.5e-240 835.1 578 70.2
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 3.8e-239 831.6 617 66.8
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 3.8e-239 831.6 616 68.3
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 2.6e-235 818.9 586 69.6
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 3.4e-235 818.5 586 70.5
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 5.4e-233 811.2 569 69.4
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 5.9e-232 807.7 532 74.8
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 7.8e-232 807.4 584 71.1
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 3.4e-227 792.0 601 66.2
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 7.5e-227 790.8 614 64.0
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 1.1e-225 786.9 558 72.9
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 4.6e-224 781.6 540 74.1
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 3.9e-223 778.5 573 66.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.1e-221 772.7 615 64.2
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 2.0e-219 766.1 584 67.3
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 3.4e-219 765.4 624 62.3
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 1.3e-218 763.5 580 65.3
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 4.1e-217 758.4 593 71.8
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 5.4e-217 758.1 573 63.5
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 3.5e-216 755.4 523 73.2
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 1.8e-212 743.0 507 73.0
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 6.8e-212 741.1 541 69.9
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 4.6e-208 728.4 586 64.3
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 3.6e-205 718.8 615 63.3
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.6e-203 712.6 568 65.5
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 1.6e-197 693.3 501 66.1
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 4.6e-184 648.7 576 55.0
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 7.9e-184 647.9 485 70.1
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 2.1e-181 639.8 573 55.1
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.5e-179 633.6 579 58.2
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 3.6e-168 595.9 562 53.2
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 3.6e-160 569.3 382 73.0
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.0e-154 551.2 335 80.0
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.1e-150 537.7 348 76.1
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 1.5e-145 520.8 383 66.6
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 2.2e-141 506.9 338 71.9
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.1e-140 504.6 577 48.0
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 1.0e-138 498.0 374 64.7
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 1.2e-136 491.1 468 56.4
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 1.3e-133 481.1 337 72.4
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 5.4e-132 475.7 601 41.4
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 2.5e-129 466.8 461 56.4
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 8.9e-103 378.6 365 51.8
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 3.3e-97 360.1 235 75.7
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 2.6e-94 350.5 656 34.0
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 3.4e-94 350.1 235 73.2
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 7.8e-91 339.0 246 67.5
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.1e-55 222.2 140 72.1
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.1e-55 222.2 168 62.5
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.1e-44 185.7 130 68.5
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 4.2e-44 183.7 158 57.6
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 4.5e-38 163.7 178 46.6
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 3.2e-36 157.5 191 47.6
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 4.2e-36 157.1 99 75.8
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 2.2e-32 144.8 85 80.0
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 2.1e-27 128.3 100 54.0
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 2.9e-21 107.8 64 71.9
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 2.5e-20 104.8 75 65.3
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.6e-19 102.1 105 52.4
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 2.7e-19 101.3 114 50.9
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 3.1e-15 87.8 85 45.9
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 1.6e-11 75.5 52 71.2
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 1.4e-10 72.4 83 54.2
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 1.2e-09 69.3 82 50.0
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 4.9e-08 63.9 42 71.4
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 8.3e-08 63.2 87 46.0
Lj5g0008066 Lotus japonicus HOM05D002380 ORTHO05D008286 2.0e-06 58.5 35 71.4


User provided reference genes

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