Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.8e-120 435.3 218 100.0
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.0e-99 364.0 194 95.9
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.6e-97 359.0 194 94.8
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.9e-73 277.3 152 92.8
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 8.4e-64 247.7 133 94.0
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.1e-46 189.9 207 52.2
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.5e-46 189.1 207 51.7
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.5e-46 189.1 207 51.7
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.5e-46 189.1 207 51.7
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.7e-45 184.9 207 50.7
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.3e-43 180.6 207 51.7
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.3e-43 180.6 207 51.7
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 2.8e-43 179.5 204 52.0
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.3e-37 159.8 206 45.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 3.9e-37 159.1 205 46.8
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.5e-36 157.1 203 44.8
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.6e-35 153.7 199 48.2
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.6e-35 153.7 203 43.8
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.4e-34 150.6 199 45.2
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 4.1e-34 149.1 197 45.7
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 9.1e-34 147.9 197 44.7
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.2e-33 147.5 205 42.9
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.2e-33 147.5 205 42.9
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 5.9e-33 145.2 197 44.2
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.9e-32 142.9 205 43.4
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 5.0e-32 142.1 211 45.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 8.5e-32 141.4 211 44.1
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 1.4e-31 140.6 199 42.7
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.4e-31 140.6 205 42.4
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 3.2e-31 139.4 204 41.2
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 5.5e-31 138.7 209 40.7
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.5e-31 138.7 205 41.5
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 7.2e-31 138.3 201 44.8
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 9.4e-31 137.9 211 40.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 4.6e-30 135.6 169 43.8
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 4.6e-30 135.6 203 43.3
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 6.1e-30 135.2 209 40.7
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 7.9e-30 134.8 209 40.7
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 7.9e-30 134.8 205 41.0
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.8e-29 133.7 176 45.5
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 3.0e-29 132.9 203 42.9
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 5.1e-29 132.1 172 44.8
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 5.1e-29 132.1 169 45.0
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.1e-29 132.1 210 41.9
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 8.8e-29 131.3 200 41.5
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.5e-28 130.6 210 38.6
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.0e-28 130.2 210 40.5
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.0e-28 130.2 210 41.9
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.6e-28 129.8 207 39.6
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 4.4e-28 129.0 208 42.3
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 5.7e-28 128.6 208 40.9
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 5.7e-28 128.6 206 37.4
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 7.4e-28 128.3 208 41.8
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.3e-27 127.5 208 42.3
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.7e-27 125.9 207 38.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 8.2e-27 124.8 208 38.9
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.4e-26 124.0 175 42.9
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 3.1e-26 122.9 212 35.8
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 4.1e-26 122.5 164 42.7
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 6.9e-26 121.7 179 39.7
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 9.1e-26 121.3 210 34.8
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 9.1e-26 121.3 210 34.8
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 9.1e-26 121.3 210 35.2
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 2.0e-25 120.2 208 40.4
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.0e-25 120.2 210 37.1
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 3.4e-25 119.4 201 38.8
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 7.7e-25 118.2 199 36.7
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 7.7e-25 118.2 169 41.4
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 7.7e-25 118.2 195 39.5
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.0e-24 117.9 208 36.5
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.3e-24 117.5 175 40.6
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.7e-24 117.1 209 35.9
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.7e-24 117.1 200 38.5
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 2.2e-24 116.7 210 37.1
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.9e-24 116.3 200 36.0
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 2.9e-24 116.3 211 36.5
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 6.5e-24 115.2 209 36.4
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 8.5e-24 114.8 194 40.7
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.1e-23 114.4 187 39.0
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.4e-23 114.0 187 39.0
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.4e-23 114.0 187 39.0
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.2e-23 112.8 200 34.0
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 3.2e-23 112.8 184 35.9
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 4.2e-23 112.5 201 35.8
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 7.2e-23 111.7 196 37.8
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 9.4e-23 111.3 204 37.3
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.2e-22 110.9 201 33.3
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.1e-22 110.2 201 35.8
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 2.1e-22 110.2 185 36.8
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 2.1e-22 110.2 203 35.5
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 2.7e-22 109.8 115 52.2
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.6e-22 109.4 197 34.0
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 7.9e-22 108.2 207 32.9
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.4e-21 107.5 165 38.8
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.4e-21 107.5 202 37.6
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.8e-21 107.1 171 38.0
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.9e-21 105.9 187 38.0
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.9e-21 105.9 204 37.3
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.7e-21 105.1 200 35.0
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.7e-21 105.1 172 39.5
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.1e-20 104.4 196 37.2
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.5e-20 104.0 200 34.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.0e-20 103.6 200 34.5
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 2.0e-20 103.6 147 37.4
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 2.6e-20 103.2 165 40.0
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 2.6e-20 103.2 168 37.5
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.6e-20 103.2 157 36.3
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.3e-20 102.8 171 38.6
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 7.4e-20 101.7 161 38.5
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 9.7e-20 101.3 198 32.8
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 9.7e-20 101.3 145 36.6
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.3e-19 100.9 159 35.8
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.3e-19 98.6 194 33.0
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.1e-18 97.8 199 31.7
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.8e-18 97.1 207 34.3
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 9.1e-18 94.7 148 35.1
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 9.1e-18 94.7 154 34.4
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.2e-17 94.4 201 33.8
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 2.0e-17 93.6 157 36.3
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.6e-17 93.2 202 33.2
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 4.5e-17 92.4 155 33.5
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.3e-16 90.9 203 32.0
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.3e-16 90.9 119 39.5
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.7e-16 90.5 130 39.2
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 3.8e-16 89.4 202 31.7
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 5.0e-16 89.0 202 32.2
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 6.5e-16 88.6 199 31.2
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 8.5e-16 88.2 201 31.3
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.1e-15 87.8 122 42.6
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.5e-15 87.4 172 30.8
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 4.2e-15 85.9 162 34.0
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 4.2e-15 85.9 201 31.3
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 4.2e-15 85.9 162 34.0
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 4.2e-15 85.9 201 31.3
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 4.2e-15 85.9 176 31.2
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 5.5e-15 85.5 162 34.0
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 7.2e-15 85.1 145 35.9
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.6e-14 84.0 145 32.4
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 3.6e-14 82.8 193 31.6
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 3.6e-14 82.8 193 32.1
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 8.0e-14 81.6 193 33.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 2.3e-13 80.1 203 31.5
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 2.3e-13 80.1 203 31.5
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.3e-13 80.1 191 30.9
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 2.3e-13 80.1 130 35.4
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 3.0e-13 79.7 198 27.3
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 4.0e-13 79.3 83 39.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.0e-13 79.3 122 35.2
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 8.8e-13 78.2 122 36.1
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.2e-12 77.8 182 33.0
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.0e-12 77.0 114 33.3
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 5.7e-12 75.5 180 27.8
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 7.5e-12 75.1 114 34.2
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 6.3e-11 72.0 80 38.8
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 8.2e-11 71.6 155 29.0
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.0e-09 67.0 78 39.7
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.0e-09 67.0 81 38.3
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 3.5e-09 66.2 101 39.6
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.3e-08 64.3 100 29.0
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.3e-08 64.3 99 36.4
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.3e-08 64.3 149 26.2
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.7e-08 63.9 83 36.1
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 8.5e-08 61.6 201 25.4
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.5e-07 60.8 94 33.0
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 4.2e-07 59.3 170 25.3
FAN14G5801 Fragaria x ananassa HOM05D003762 ORTHO05D205490 5.5e-07 58.9 27 100.0
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.7e-06 55.8 110 32.7


User provided reference genes

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