Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 0.0e+00 1550.0 1367 100.0
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 0.0e+00 1389.4 1367 92.1
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 0.0e+00 1361.7 1367 92.2
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 0.0e+00 1295.0 1380 87.9
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 0.0e+00 1287.3 1367 85.5
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 0.0e+00 1184.9 1380 84.1
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 0.0e+00 1184.9 1380 84.1
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 2.3e-284 983.0 1381 66.6
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.7e-271 940.3 1380 65.6
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 1.2e-256 891.0 1385 63.3
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 3.0e-220 770.0 1378 51.3
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 8.9e-212 741.9 1380 60.6
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 5.6e-198 696.0 1376 51.4
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.0e-191 675.2 1378 50.9
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 6.6e-191 672.5 1464 49.9
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 4.3e-190 669.8 1531 42.8
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.8e-189 667.2 1379 53.7
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 5.6e-182 642.9 1358 52.1
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 1.6e-181 641.3 1379 51.2
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.4e-180 638.3 1379 51.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 3.1e-180 637.1 1373 48.7
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 4.5e-179 633.3 1381 57.3
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 5.4e-177 626.3 1382 53.6
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 6.0e-176 622.9 1383 53.7
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 7.6e-171 605.9 1376 51.4
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.4e-169 600.9 1374 48.0
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 4.0e-164 583.6 1099 46.2
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 5.8e-163 579.7 1374 48.5
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 7.6e-163 579.3 1378 48.2
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 2.8e-157 560.8 1415 51.4
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 2.9e-154 550.8 1385 52.9
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.0e-154 550.1 1371 53.5
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.9e-153 548.1 1554 43.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.6e-152 545.0 1371 52.7
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.1e-152 543.1 1371 53.0
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 2.5e-150 537.7 1376 50.2
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 2.2e-149 534.6 1294 45.4
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 5.3e-148 530.0 1403 45.2
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 3.4e-147 527.3 1376 47.2
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 4.5e-147 526.9 1584 41.1
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 5.9e-147 526.6 1375 51.5
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.7e-141 508.4 1378 52.0
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.7e-139 499.6 1385 43.2
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.0e-138 499.2 1378 45.4
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.3e-138 498.8 1375 43.8
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.7e-138 498.4 1303 47.7
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 3.8e-138 497.3 1579 38.6
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 4.2e-137 493.8 1375 47.5
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 5.2e-135 486.9 1379 50.4
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 8.8e-135 486.1 1352 44.5
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 1.3e-133 482.3 1576 36.7
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 1.7e-133 481.9 1377 50.2
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 8.2e-133 479.6 1372 42.9
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 2.4e-132 478.0 1372 44.7
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 3.5e-131 474.2 1378 44.3
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.1e-124 452.6 1666 32.8
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 9.1e-124 449.5 1354 42.1
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 2.7e-123 448.0 1376 43.8
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 4.5e-123 447.2 625 51.8
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 7.2e-121 439.9 1381 42.4
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 1.0e-119 436.0 1372 40.2
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 4.0e-119 434.1 1215 44.2
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 5.2e-119 433.7 1567 40.0
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 8.8e-119 433.0 1355 43.2
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 3.4e-118 431.0 1572 40.3
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 8.3e-117 426.4 1376 49.6
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 3.5e-115 421.0 1384 40.2
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 4.5e-115 420.6 1376 47.6
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 7.2e-113 413.3 1387 47.4
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 4.9e-109 400.6 622 49.0
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.8e-106 391.0 1438 37.9
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.8e-106 391.0 1373 44.6
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 5.6e-105 387.1 1563 40.0
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 5.2e-103 380.6 711 40.4
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 5.8e-102 377.1 1377 44.7
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.9e-98 364.4 1373 42.8
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.5e-97 362.5 1373 43.3
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 5.8e-94 350.5 1369 43.9
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 8.3e-93 346.7 1666 31.2
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 2.4e-92 345.1 1566 34.7
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.7e-91 341.7 1387 40.6
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 1.6e-88 332.4 1380 42.8
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 2.0e-86 325.5 1141 43.1
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 3.7e-85 321.2 1464 39.5
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 7.3e-81 307.0 1374 42.4
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.8e-80 305.1 1442 29.8
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 4.9e-77 294.3 1310 38.1
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.4e-76 292.0 749 32.7
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 7.6e-70 270.4 1446 34.2
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 1.1e-68 266.5 1376 41.6
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.1e-63 250.0 1283 31.7
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 8.4e-61 240.4 1277 48.2
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 7.1e-60 237.3 555 37.8
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 4.6e-59 234.6 309 49.5
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 2.4e-55 222.2 402 48.0
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 9.0e-55 220.3 382 42.9
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 2.9e-53 215.3 638 36.5
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 4.2e-52 211.5 372 49.5
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 9.3e-52 210.3 408 39.0
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.8e-50 206.1 239 58.6
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 2.8e-48 198.7 372 41.1
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 6.2e-48 197.6 286 47.6
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.4e-47 196.4 363 48.8
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 1.4e-47 196.4 222 54.1
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.8e-47 196.1 999 32.0
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 3.1e-47 195.3 600 32.2
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 3.2e-44 185.3 784 42.6
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.2e-44 184.9 615 35.9
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 2.5e-41 175.6 658 32.1
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.2e-40 170.6 409 34.7
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 4.1e-39 168.3 243 53.5
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 2.2e-37 162.5 206 51.5
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.9e-37 162.2 617 35.3
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 3.8e-37 161.8 294 55.4
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.4e-36 159.8 328 36.9
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.8e-34 152.9 413 41.2
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 4.3e-33 148.3 347 38.0
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 9.7e-33 147.1 344 38.7
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 2.8e-32 145.6 508 30.3
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 8.2e-32 144.1 164 51.2
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 1.0e-29 137.1 1264 42.4
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.3e-29 136.7 352 32.4
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 6.5e-29 134.4 645 26.0
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 8.5e-29 134.0 347 37.5
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 8.5e-29 134.0 347 37.5
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 7.9e-27 127.5 355 36.1
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 8.8e-26 124.0 616 37.3
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.6e-25 122.5 616 35.7
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 4.4e-25 121.7 395 29.9
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.7e-24 119.8 304 36.2
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.7e-24 118.6 636 31.1
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 7.0e-23 114.4 548 27.9
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 9.1e-23 114.0 141 48.2
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 2.6e-22 112.5 173 41.6
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.5e-22 111.7 443 28.2
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 1.9e-20 106.3 376 26.3
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 2.5e-20 105.9 326 32.8
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.0e-18 100.5 186 39.8
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.0e-18 100.5 186 39.8
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 6.7e-18 97.8 340 31.2
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.6e-17 95.9 155 54.8
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 4.4e-17 95.1 1463 43.5
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-16 93.6 599 22.9
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.3e-16 93.6 410 27.6
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 2.8e-16 92.4 396 26.5
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 4.8e-16 91.7 1297 32.4
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.1e-15 90.5 193 35.8
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.4e-15 89.4 193 35.2
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 2.4e-15 89.4 1390 31.9
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.0e-14 86.3 83 53.0
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.6e-14 85.9 83 53.0
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 3.5e-14 85.5 355 31.3
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.3e-13 83.6 120 49.2
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 8.5e-13 80.9 184 32.6
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.5e-12 79.3 404 27.0
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 4.2e-12 78.6 233 31.3
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 8.0e-11 74.3 93 45.2
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 1.0e-10 73.9 115 43.5
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 3.0e-10 72.4 197 33.5
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.0e-10 72.0 86 48.8
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 5.2e-10 71.6 336 30.4
FAN15G0416 Fragaria x ananassa HOM05D020189 ORTHO05D015668 5.2e-10 71.6 57 77.2
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 6.8e-10 71.2 1374 29.5
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 2.0e-09 69.7 89 46.1
FAN13G2891 Fragaria x ananassa HOM05D020189 ORTHO05D004346 2.6e-09 69.3 56 75.0
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 3.4e-09 68.9 457 30.9
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 7.5e-09 67.8 309 26.9
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 3.7e-08 65.5 90 48.9
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 4.8e-08 65.1 79 49.4
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 2.4e-07 62.8 83 50.6
FAN20G2105 Fragaria x ananassa HOM05D020189 ORTHO05D004346 1.2e-06 60.5 48 75.0
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.6e-06 60.1 320 29.7
CDE06G0101 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 2.0e-06 59.7 102 42.2
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 2.0e-06 59.7 52 59.6


User provided reference genes

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