Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0462 Fragaria x ananassa HOM05D002488 ORTHO05D002613 5.5e-87 324.3 170 100.0
FvH4_2g00400 Fragaria vesca HOM05D002488 ORTHO05D002613 1.1e-29 134.0 90 78.9
FAN24G3477 Fragaria x ananassa HOM05D002488 ORTHO05D002613 3.1e-29 132.5 90 77.8
FAN20G0001 Fragaria x ananassa HOM05D002488 ORTHO05D002613 5.2e-29 131.7 90 77.8
FAN02G0423 Fragaria x ananassa HOM05D002488 ORTHO05D002613 1.5e-28 130.2 87 80.5
FAN27G2309 Fragaria x ananassa HOM05D002488 ORTHO05D002613 5.8e-28 128.3 90 76.7
RcHm_v2.0_Chr6g0249641 Rosa chinensis HOM05D002488 ORTHO05D002613 1.1e-26 124.0 96 68.8
FAN19G3027 Fragaria x ananassa HOM05D002488 ORTHO05D002613 9.2e-26 120.9 90 70.0
FAN25G0877 Fragaria x ananassa HOM05D000023 ORTHO05D010681 2.1e-25 119.8 78 79.5
FAN25G2356 Fragaria x ananassa HOM05D000023 ORTHO05D010681 2.1e-25 119.8 78 79.5
Prupe.8G003900 Prunus persica HOM05D002488 ORTHO05D002613 3.9e-24 115.5 90 64.4
Atru.chr9.2572 Acer truncatum HOM05D002488 ORTHO05D002613 7.3e-23 111.3 90 64.4
TWI23G0090 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 6.9e-21 104.8 96 55.2
QL10p006915 Quercus lobata HOM05D002488 ORTHO05D002613 3.4e-20 102.4 90 60.0
Cpa.g.sc159.31 Carica papaya HOM05D002488 ORTHO05D002613 5.8e-20 101.7 90 57.8
Sabra12G0061500 Salix brachista HOM05D002488 ORTHO05D002613 7.6e-20 101.3 90 56.7
CANSAT80G1691 Cannabis sativa HOM05D002488 ORTHO05D002613 1.7e-19 100.1 90 56.7
Manes.06G109900 Manihot esculenta HOM05D002488 ORTHO05D002613 1.7e-19 100.1 90 54.4
Potri.015G083800 Populus trichocarpa HOM05D002488 ORTHO05D002613 1.7e-19 100.1 90 56.7
CiPaw.12G030700 Carya illinoinensis HOM05D002488 ORTHO05D002613 2.9e-19 99.4 90 56.7
PGR083G2220 Punica granatum HOM05D002488 ORTHO05D002613 2.9e-19 99.4 93 51.6
Cfa019211 Carpinus fangiana HOM05D002488 ORTHO05D002613 3.8e-19 99.0 81 61.7
ClCG06G017390 Citrullus lanatus HOM05D002488 ORTHO05D002613 6.4e-19 98.2 90 55.6
Manes.14G060900 Manihot esculenta HOM05D002488 ORTHO05D002613 8.4e-19 97.8 90 54.4
Haze_07582 Corylus avellana HOM05D002488 ORTHO05D002613 1.1e-18 97.4 81 60.5
Dinv20601 Davidia involucrata HOM05D002488 ORTHO05D002613 1.9e-18 96.7 90 55.6
MD10G1041600 Malus domestica HOM05D002488 ORTHO05D002613 1.9e-18 96.7 90 56.7
CiPaw.11G020700 Carya illinoinensis HOM05D002488 ORTHO05D002613 2.4e-18 96.3 90 57.8
Nn2g14939 Nelumbo nucifera HOM05D002488 ORTHO05D002613 3.2e-18 95.9 90 54.4
CsaV3_1G001020 Cucumis sativus L. HOM05D002488 ORTHO05D002613 4.2e-18 95.5 90 54.4
Dinv01306 Davidia involucrata HOM05D002488 ORTHO05D002613 9.3e-18 94.4 87 56.3
Actinidia08959 Actinidia chinensis HOM05D002488 ORTHO05D002613 1.2e-17 94.0 90 53.3
Dinv38530 Davidia involucrata HOM05D002488 ORTHO05D002613 1.2e-17 94.0 87 56.3
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 1.2e-17 94.0 90 54.4
MELO3C026254.2 Cucumis melo HOM05D002488 ORTHO05D002613 1.6e-17 93.6 87 54.0
Eucgr.B00224 Eucalyptus grandis HOM05D002488 ORTHO05D002613 1.6e-17 93.6 102 49.0
Potri.012G085600 Populus trichocarpa HOM05D002488 ORTHO05D002613 1.6e-17 93.6 90 53.3
COL.COLO4_35718 Corchorus olitorius HOM05D002488 ORTHO05D002613 2.1e-17 93.2 90 54.4
Duzib068G0576 Durio zibethinus HOM05D002488 ORTHO05D002613 2.7e-17 92.8 90 54.4
Sed0021301 Sechium edule HOM05D002488 ORTHO05D002613 2.7e-17 92.8 85 52.9
Sed0014577 Sechium edule HOM05D002488 ORTHO05D002613 3.5e-17 92.4 90 53.3
Ca_14275_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 4.6e-17 92.0 87 50.6
Thecc.03G025300 Theobroma cacao HOM05D002488 ORTHO05D002613 6.0e-17 91.7 90 52.2
Sc04g0001530 Simmondsia chinensis HOM05D002488 ORTHO05D002613 1.0e-16 90.9 90 54.4
Duzib205G2026 Durio zibethinus HOM05D002488 ORTHO05D002613 1.3e-16 90.5 90 52.2
MBI04_g31204_MAGBIO Magnolia biondii HOM05D002488 ORTHO05D002613 1.7e-16 90.1 90 50.0
Psat4g060240 Pisum sativum HOM05D002488 ORTHO05D002613 1.7e-16 90.1 90 50.0
Rhsim12G0167800 Rhododendron simsii HOM05D002488 ORTHO05D002613 1.7e-16 90.1 85 54.1
Lj5C129G10 Lonicera japonica HOM05D002488 ORTHO05D002613 2.3e-16 89.7 85 55.3
CSS0004341 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 3.0e-16 89.4 90 51.1
MD05G1037800 Malus domestica HOM05D002488 ORTHO05D002613 3.0e-16 89.4 90 51.1
Lalb_Chr23g0273331 Lupinus albus HOM05D002488 ORTHO05D002613 3.9e-16 89.0 90 47.8
Gohir.A12G199300 Gossypium hirsutum HOM05D002488 ORTHO05D002613 6.6e-16 88.2 85 55.3
Gohir.D12G202100 Gossypium hirsutum HOM05D002488 ORTHO05D002613 6.6e-16 88.2 85 55.3
Gorai.008G217100 Gossypium raimondii HOM05D002488 ORTHO05D002613 6.6e-16 88.2 85 55.3
Lj9A442T65 Lonicera japonica HOM05D002488 ORTHO05D002613 1.5e-15 87.0 90 50.0
Lj4g0015296 Lotus japonicus HOM05D002488 ORTHO05D002613 2.5e-15 86.3 90 47.8
CAN.G338.29 Capsicum annuum HOM05D002488 ORTHO05D002613 9.6e-15 84.3 90 48.9
SHI17281 Sapria himalayana HOM05D002488 ORTHO05D002613 1.3e-14 84.0 90 50.0
Nn4g22610 Nelumbo nucifera HOM05D002488 ORTHO05D002613 1.6e-14 83.6 90 50.0
Nitab4.5_0003703g0050 Nicotiana tabacum HOM05D002488 ORTHO05D002613 2.8e-14 82.8 90 47.8
Solyc03g112270.3 Solanum lycopersicum HOM05D002488 ORTHO05D002613 3.6e-14 82.4 90 47.8
vmacro16644 Vaccinium macrocarpon HOM05D002488 ORTHO05D002613 3.6e-14 82.4 85 52.9
Lj1g0012260 Lotus japonicus HOM05D002488 ORTHO05D002613 4.8e-14 82.0 90 45.6
Nitab4.5_0001793g0070 Nicotiana tabacum HOM05D002488 ORTHO05D002613 6.2e-14 81.6 85 48.2
TWI39G1221 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 6.2e-14 81.6 96 49.0
ATR0824G118 Amborella trichopoda HOM05D002488 ORTHO05D002613 1.1e-13 80.9 90 44.4
Glyma.05G041400 Glycine max HOM05D002488 ORTHO05D002613 1.1e-13 80.9 96 42.7
Lalb_Chr13g0297591 Lupinus albus HOM05D002488 ORTHO05D002613 1.1e-13 80.9 90 43.3
Sopen03g031370 Solanum pennellii HOM05D002488 ORTHO05D002613 1.1e-13 80.9 90 46.7
Medtr4g105010 Medicago truncatula HOM05D002488 ORTHO05D002613 1.4e-13 80.5 87 44.8
TPR.G21814 Trifolium pratense HOM05D002488 ORTHO05D002613 1.8e-13 80.1 90 43.3
Ca_16132_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 2.4e-13 79.7 90 45.6
PGSC0003DMG400018117 Solanum tuberosum HOM05D002488 ORTHO05D002613 2.4e-13 79.7 90 45.6
Ciclev10019747m.g Citrus clementina HOM05D002488 ORTHO05D002613 4.0e-13 79.0 90 44.4
arahy.Tifrunner.gnm1.ann1.9WU370 Arachis hypogaea HOM05D002488 ORTHO05D002613 5.3e-13 78.6 96 43.8
FAN21G3357 Fragaria x ananassa HOM05D000399 ORTHO05D002613 5.3e-13 78.6 45 91.1
TPR.G37454 Trifolium pratense HOM05D002488 ORTHO05D002613 5.3e-13 78.6 87 43.7
VMungo1215G1015 Vigna mungo HOM05D002488 ORTHO05D002613 6.9e-13 78.2 90 43.3
Phvul.003G204700 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 9.0e-13 77.8 90 43.3
arahy.Tifrunner.gnm1.ann1.ZI7BUH Arachis hypogaea HOM05D002488 ORTHO05D002613 1.2e-12 77.4 96 43.8
Psat0s3170g0040 Pisum sativum HOM05D002488 ORTHO05D002613 2.6e-12 76.3 90 41.1
arahy.Tifrunner.gnm1.ann1.A1CNSV Arachis hypogaea HOM05D002488 ORTHO05D002613 5.8e-12 75.1 87 42.5
VMungo1309G0915 Vigna mungo HOM05D002488 ORTHO05D002613 5.8e-12 75.1 86 44.2
Gorai.013G119900 Gossypium raimondii HOM05D002488 ORTHO05D002613 1.3e-11 73.9 96 46.9
Lalb_Chr08g0236741 Lupinus albus HOM05D002488 ORTHO05D002613 1.7e-11 73.6 83 47.0
Medtr3g076990 Medicago truncatula HOM05D002488 ORTHO05D002613 1.7e-11 73.6 90 40.0
Glyma.04G188000 Glycine max HOM05D002488 ORTHO05D002613 2.2e-11 73.2 86 43.0
FAN04G2264 Fragaria x ananassa HOM05D002596 ORTHO05D002851 4.9e-11 72.0 59 69.5
Phvul.009G174300 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 8.4e-11 71.2 86 43.0
Dinv31672 Davidia involucrata HOM05D002488 ORTHO05D002613 3.2e-10 69.3 65 47.7
EL10Ac5g10659 Beta vulgaris HOM05D002488 ORTHO05D002613 7.1e-10 68.2 82 48.8
AUR62008148 Chenopodium quinoa HOM05D002488 ORTHO05D002613 9.3e-10 67.8 82 48.8
Cc04_g11610 Coffea canephora HOM05D002488 ORTHO05D002613 1.2e-09 67.4 83 47.0
CSS0018025 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 1.6e-09 67.0 67 56.7
CSS0031964 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 1.6e-09 67.0 67 56.7
HPP92_021378 Vanilla planifolia HOM05D002488 ORTHO05D002613 1.6e-09 67.0 91 44.0
AUR62028730 Chenopodium quinoa HOM05D002488 ORTHO05D002613 2.1e-09 66.6 82 47.6
Carub.0006s0475 Capsella rubella HOM05D002488 ORTHO05D002613 3.5e-09 65.9 92 43.5
AT5G05850 Arabidopsis thaliana HOM05D002488 ORTHO05D002613 7.9e-09 64.7 86 44.2
AL6G15760 Arabidopsis lyrata HOM05D002488 ORTHO05D002613 1.0e-08 64.3 92 42.4
BcaC06g32293 Brassica carinata HOM05D002488 ORTHO05D002613 1.0e-08 64.3 96 42.7
Thhalv10013295m.g Eutrema salsugineum HOM05D002488 ORTHO05D002613 1.3e-08 63.9 92 41.3
Sp6g37050 Schrenkiella parvula HOM05D002488 ORTHO05D002613 1.3e-08 63.9 92 41.3
THA.LOC104816567 Tarenaya hassleriana HOM05D002488 ORTHO05D002613 1.3e-08 63.9 83 45.8
Aa31LG11G6860 Aethionema arabicum HOM05D002488 ORTHO05D002613 1.8e-08 63.5 102 38.2
CARHR207400 Cardamine hirsuta HOM05D002488 ORTHO05D002613 1.8e-08 63.5 83 44.6
Ah.02g110840 Amaranthus hybridus HOM05D002488 ORTHO05D002613 3.0e-08 62.8 70 45.7
BcaNung06796 Brassica carinata HOM05D002488 ORTHO05D002613 3.0e-08 62.8 95 42.1
A10p30520 Brassica napus HOM05D002488 ORTHO05D002613 3.0e-08 62.8 95 42.1
C09p70980 Brassica napus HOM05D002488 ORTHO05D002613 3.0e-08 62.8 95 42.1
BolC9t59862H Brassica oleracea HOM05D002488 ORTHO05D002613 3.0e-08 62.8 95 42.1
CDE02G2064 Ceratophyllum demersum HOM05D002488 ORTHO05D002613 3.9e-08 62.4 84 39.3
BraA10t45093Z Brassica rapa HOM05D002488 ORTHO05D002613 8.7e-08 61.2 95 41.1
Aqoxy3G01216 Aquilegia oxysepala HOM05D002488 ORTHO05D002613 1.1e-07 60.8 73 45.2
ECA246G1629 Erigeron canadensis HOM05D002176 ORTHO05D002598 1.5e-07 60.5 83 44.6
Lsat_1_v5_gn_5_14360 Lactuca sativa HOM05D002488 ORTHO05D002613 1.5e-07 60.5 83 44.6
AL3G22840 Arabidopsis lyrata HOM05D002488 ORTHO05D002613 1.9e-07 60.1 91 39.6
MBI01_g17244_MAGBIO Magnolia biondii HOM05D002488 ORTHO05D002613 2.5e-07 59.7 83 44.6
HanXRQChr05g0154171 Helianthus annuus HOM05D002488 ORTHO05D002613 3.3e-07 59.3 82 43.9
Ah.11g051140 Amaranthus hybridus HOM05D002488 ORTHO05D002613 5.6e-07 58.5 70 42.9
Carub.0003s1066 Capsella rubella HOM05D002488 ORTHO05D002613 5.6e-07 58.5 62 50.0
CARHR085880 Cardamine hirsuta HOM05D002488 ORTHO05D002613 5.6e-07 58.5 62 50.0
AT3G11330 Arabidopsis thaliana HOM05D002488 ORTHO05D002613 9.6e-07 57.8 62 50.0
Aa31LG3G4660 Aethionema arabicum HOM05D002488 ORTHO05D002613 2.1e-06 56.6 92 38.0
A03p37010 Brassica napus HOM05D002488 ORTHO05D002613 2.8e-06 56.2 91 38.5
BraA03t12863Z Brassica rapa HOM05D002488 ORTHO05D002613 2.8e-06 56.2 91 38.5
C03p44800 Brassica napus HOM05D002488 ORTHO05D002613 3.7e-06 55.8 91 38.5
BolC3t16743H Brassica oleracea HOM05D002488 ORTHO05D002613 3.7e-06 55.8 91 38.5
Thhalv10020430m.g Eutrema salsugineum HOM05D002488 ORTHO05D002613 3.7e-06 55.8 62 48.4
Nitab4.5_0000025g0310 Nicotiana tabacum HOM05D002488 ORTHO05D002613 3.7e-06 55.8 84 45.2
AagrBONN_evm.TU.Sc2ySwM_368.3263 Anthoceros agrestis HOM05D004636 ORTHO05D005584 4.8e-06 55.5 68 38.2
A05p38020 Brassica napus HOM05D002488 ORTHO05D002613 4.8e-06 55.5 68 44.1
BraA05t22593Z Brassica rapa HOM05D002488 ORTHO05D002613 4.8e-06 55.5 68 44.1
Peaxi162Scf00089g01345 Petunia axillaris HOM05D002488 ORTHO05D002613 4.8e-06 55.5 69 47.8
C05p56780 Brassica napus HOM05D002488 ORTHO05D002613 8.1e-06 54.7 68 44.1
BolC5t34343H Brassica oleracea HOM05D002488 ORTHO05D002613 8.1e-06 54.7 72 41.7
PSO017G5698 Papaver somniferum HOM05D002488 ORTHO05D002613 8.1e-06 54.7 92 37.0
PSO478G1227 Papaver somniferum HOM05D002488 ORTHO05D002613 8.1e-06 54.7 92 37.0


User provided reference genes

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