Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.3e-95 351.7 173 100.0
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.6e-89 332.8 170 95.9
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.0e-88 330.1 170 94.7
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.0e-88 330.1 170 94.1
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.6e-86 322.8 165 95.8
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 8.1e-78 293.9 171 87.1
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 1.4e-69 266.5 170 78.8
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 9.9e-68 260.4 170 77.6
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.6e-62 243.0 173 72.3
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.1e-61 240.4 170 71.8
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 1.5e-60 236.5 170 71.8
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 2.0e-60 236.1 173 69.4
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 2.6e-60 235.7 171 71.9
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 3.4e-60 235.3 170 71.8
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 4.5e-60 235.0 171 71.3
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 5.8e-60 234.6 172 70.9
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.1e-58 230.3 170 69.4
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.4e-58 229.9 171 70.2
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.4e-58 229.9 170 69.4
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.2e-58 228.4 168 69.6
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 7.1e-58 227.6 168 69.0
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 1.2e-57 226.9 170 68.8
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 2.7e-57 225.7 202 61.9
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.0e-56 223.8 172 67.4
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 2.3e-56 222.6 166 67.5
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 6.7e-56 221.1 170 67.1
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 8.7e-56 220.7 159 68.6
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.1e-55 220.3 172 66.9
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.5e-55 219.9 170 67.1
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 3.3e-55 218.8 171 69.6
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 3.3e-55 218.8 171 69.6
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.3e-55 218.8 168 66.1
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 4.3e-55 218.4 167 67.1
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 5.7e-55 218.0 172 64.0
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.3e-54 216.9 168 66.1
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.3e-54 216.9 168 65.5
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.6e-54 216.5 170 67.6
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 2.1e-54 216.1 170 63.5
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 4.8e-54 214.9 142 75.4
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 4.8e-54 214.9 167 70.1
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.2e-54 214.5 168 66.7
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 6.2e-54 214.5 170 65.9
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.4e-53 213.4 168 64.9
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.4e-53 212.6 156 67.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 3.1e-53 212.2 167 67.1
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 4.1e-53 211.8 171 66.1
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 5.3e-53 211.5 168 66.7
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.5e-52 209.9 166 64.5
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 2.6e-52 209.1 165 64.8
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 3.4e-52 208.8 133 75.9
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.4e-52 208.8 168 63.1
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 4.5e-52 208.4 171 64.9
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 4.5e-52 208.4 166 64.5
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 7.6e-52 207.6 164 66.5
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 7.6e-52 207.6 180 60.0
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 7.6e-52 207.6 173 63.6
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.3e-51 206.8 171 60.8
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.7e-51 206.5 169 65.7
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 3.8e-51 205.3 173 65.3
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 6.5e-51 204.5 168 62.5
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.1e-50 203.8 169 64.5
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.4e-50 203.4 131 75.6
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 3.2e-50 202.2 163 65.0
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.2e-50 201.8 171 64.9
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 5.5e-50 201.4 157 64.3
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 9.3e-50 200.7 133 71.4
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 9.3e-50 200.7 131 76.3
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.2e-49 200.3 133 72.9
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-49 200.3 133 75.9
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.6e-49 199.9 132 75.8
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 6.1e-49 198.0 140 68.6
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 7.9e-49 197.6 160 65.0
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 7.9e-49 197.6 141 69.5
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 1.8e-48 196.4 142 72.5
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.3e-48 196.1 168 61.3
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.3e-48 196.1 169 62.7
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 3.0e-48 195.7 157 60.5
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 3.9e-48 195.3 131 73.3
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 6.7e-48 194.5 171 62.6
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 6.7e-48 194.5 211 52.1
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 8.7e-48 194.1 167 61.7
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 2.5e-47 192.6 168 63.7
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 5.7e-47 191.4 157 61.1
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.6e-46 189.9 157 61.1
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 4.8e-46 188.3 159 59.1
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.4e-45 186.8 165 58.8
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 1.5e-44 183.3 157 58.6
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 5.9e-44 181.4 134 67.9
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 5.9e-44 181.4 128 71.9
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 7.7e-44 181.0 160 57.5
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.7e-43 179.9 134 67.9
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.9e-43 179.1 165 57.6
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 5.0e-43 178.3 133 66.9
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.4e-42 176.8 165 57.6
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 1.9e-42 176.4 160 56.9
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.9e-42 176.4 132 65.2
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.2e-41 173.7 131 64.1
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 3.6e-41 172.2 133 63.9
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.4e-40 170.2 151 58.3
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.8e-40 169.9 134 64.9
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 6.7e-40 167.9 134 65.7
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 8.8e-40 167.5 115 69.6
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 2.0e-39 166.4 132 60.6
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 3.3e-39 165.6 95 84.2
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.3e-38 163.7 132 65.2
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 6.3e-38 161.4 134 61.2
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 6.9e-37 157.9 156 55.1
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.2e-36 157.1 134 56.0
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 3.4e-36 155.6 156 53.8
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 4.5e-36 155.2 131 60.3
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 1.7e-35 153.3 167 53.9
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 1.7e-35 153.3 167 53.9
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 2.2e-35 152.9 138 56.5
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 8.5e-35 151.0 130 63.1
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.1e-34 150.6 120 64.2
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.9e-34 149.8 145 56.6
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 3.9e-32 142.1 135 59.3
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 6.7e-32 141.4 157 51.0
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.1e-31 140.6 113 63.7
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 1.8e-29 133.3 133 51.9
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 7.0e-29 131.3 121 56.2
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.0e-27 127.5 133 53.4
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.1e-25 119.8 133 51.9
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 7.2e-18 94.7 152 41.4
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.4e-16 90.5 69 65.2
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 5.7e-15 85.1 68 61.8
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.8e-13 80.1 75 56.0
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 4.9e-06 55.5 34 76.5


User provided reference genes

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