Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 0.0e+00 1458.4 771 100.0
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 0.0e+00 1387.9 806 92.6
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 0.0e+00 1387.5 806 91.4
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 0.0e+00 1368.2 812 90.5
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 0.0e+00 1148.7 804 80.3
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 2.6e-277 958.7 831 66.1
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 2.4e-270 935.6 833 63.4
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 4.5e-269 931.4 833 64.7
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 2.6e-245 852.4 784 59.1
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 3.2e-243 845.5 851 55.5
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 3.6e-242 842.0 817 60.7
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 1.8e-241 839.7 811 59.9
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 4.4e-240 835.1 825 60.8
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 1.7e-239 833.2 779 58.8
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.5e-237 826.6 851 57.6
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 1.5e-237 826.6 851 59.1
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 3.6e-234 815.5 790 56.5
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 1.0e-233 813.9 814 55.5
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 1.8e-233 813.1 792 56.1
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 1.7e-231 806.6 788 55.7
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 6.3e-231 804.7 798 56.0
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 2.4e-230 802.7 777 55.6
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 3.1e-230 802.4 829 55.7
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 5.9e-229 798.1 827 53.8
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 6.5e-228 794.7 785 58.7
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 8.5e-228 794.3 807 55.4
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 8.5e-228 794.3 789 57.4
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 1.1e-227 793.9 791 55.0
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 1.5e-227 793.5 800 55.6
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.5e-227 792.7 785 57.7
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 4.2e-227 792.0 791 54.6
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.5e-227 791.6 785 57.6
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.1e-226 789.6 791 56.9
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 2.7e-226 789.3 843 52.8
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 4.7e-226 788.5 791 54.5
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 1.0e-225 787.3 793 54.7
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 4.4e-224 781.9 814 54.1
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 7.5e-224 781.2 802 53.5
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 1.7e-223 780.0 848 53.4
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.7e-223 780.0 851 55.2
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 2.4e-222 776.2 827 55.5
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.6e-221 773.5 782 54.1
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 2.0e-221 773.1 788 54.4
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.0e-221 773.1 789 56.4
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 3.5e-221 772.3 819 53.6
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 1.7e-220 770.0 801 52.3
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 2.2e-220 769.6 855 54.7
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 2.9e-220 769.2 826 52.9
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 1.1e-219 767.3 841 55.2
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 1.9e-219 766.5 855 54.2
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 7.2e-219 764.6 793 55.6
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 3.6e-218 762.3 773 54.9
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.0e-217 760.8 855 54.4
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 1.4e-214 750.4 745 54.1
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 1.3e-212 743.8 754 54.8
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 2.9e-212 742.7 784 54.1
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 3.8e-212 742.3 762 54.6
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 8.6e-212 741.1 793 51.8
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.2e-210 737.3 856 50.1
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 1.2e-210 737.3 784 54.5
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.1e-210 736.5 802 54.0
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.7e-210 735.3 804 51.2
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 8.9e-209 731.1 813 54.5
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 9.8e-208 727.6 776 54.5
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 8.3e-207 724.5 856 51.2
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 7.0e-206 721.5 783 54.9
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 2.0e-205 719.9 782 53.7
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 3.8e-204 715.7 821 52.0
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.1e-203 714.1 795 51.3
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.9e-203 713.4 784 52.6
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 3.3e-203 712.6 823 50.2
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 5.6e-203 711.8 788 51.0
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 2.1e-202 709.9 803 51.2
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 2.0e-200 703.4 771 54.2
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 8.3e-199 698.0 818 50.9
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.7e-196 690.3 828 49.9
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 8.6e-196 688.0 823 50.1
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 1.1e-195 687.6 817 51.0
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 5.6e-195 685.3 814 49.5
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 2.3e-193 679.9 814 49.5
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 1.5e-192 677.2 778 51.2
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 1.5e-192 677.2 826 49.3
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 4.4e-192 675.6 834 49.4
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 2.9e-191 672.9 794 50.0
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 6.4e-191 671.8 656 54.3
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.2e-189 667.5 838 48.8
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 1.5e-187 660.6 806 46.5
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 2.1e-181 640.2 745 52.3
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 3.5e-181 639.4 694 51.3
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 1.5e-179 634.0 797 45.4
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.5e-179 633.3 518 63.5
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 5.8e-176 622.1 557 60.1
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 5.8e-176 622.1 786 46.2
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 6.6e-172 608.6 797 47.2
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 9.0e-169 598.2 788 44.7
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 2.6e-168 596.7 741 48.0
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 9.3e-166 588.2 819 45.4
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 4.2e-150 536.2 605 55.0
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 2.7e-141 506.9 862 38.4
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 1.1e-137 495.0 655 45.6
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.7e-135 487.6 531 53.3
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 5.0e-135 486.1 830 37.2
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 6.1e-133 479.2 803 37.9
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 4.3e-131 473.0 394 58.4
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 5.9e-128 462.6 562 48.8
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.3e-122 444.9 777 36.7
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.8e-122 443.7 388 58.2
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 9.1e-121 438.7 495 51.9
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 9.7e-107 392.1 477 53.0
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 6.8e-100 369.4 790 32.7
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 8.9e-92 342.4 457 48.6
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 1.9e-81 308.1 371 52.0
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 4.4e-75 287.0 415 46.3
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 2.1e-72 278.1 391 46.8
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 2.4e-65 254.6 494 31.8
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 1.2e-64 252.3 229 54.1
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 6.6e-63 246.5 475 40.4
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 2.4e-57 228.0 314 48.7
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.2e-48 199.1 199 52.3
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 9.6e-38 162.9 171 56.1
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 3.3e-30 137.9 489 24.9
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 9.0e-28 129.8 81 74.1
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 1.7e-26 125.6 197 38.6
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 1.8e-23 115.5 187 39.6
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.8e-23 115.5 93 57.0
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 1.1e-22 112.8 114 50.9
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 3.3e-22 111.3 137 49.6
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 2.6e-19 101.7 208 31.7
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 7.9e-16 90.1 161 41.6
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.7e-13 82.4 133 34.6
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 4.8e-13 80.9 307 30.9
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 8.2e-13 80.1 104 48.1
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 8.2e-13 80.1 104 48.1
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 5.3e-12 77.4 210 33.8
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.9e-12 77.0 206 34.5
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 6.5e-10 70.5 50 68.0
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 6.5e-10 70.5 50 68.0
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 2.1e-08 65.5 48 68.8
C01p19550 Brassica napus HOM05D005319 ORTHO05D006632 6.1e-08 63.9 115 40.9
A03p55220 Brassica napus HOM05D005319 ORTHO05D041784 2.3e-07 62.0 42 71.4
BraA03t14581Z Brassica rapa HOM05D005319 ORTHO05D041784 2.3e-07 62.0 42 71.4
BcaNung06598 Brassica carinata HOM05D005319 ORTHO05D010222 3.0e-07 61.6 41 73.2
Aa31LG5G3310 Aethionema arabicum HOM05D002279 ORTHO05D002644 2.6e-06 58.5 378 24.3
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 2.6e-06 58.5 70 47.1
BcaC06g32892 Brassica carinata HOM05D008164 ORTHO05D010222 9.7e-06 56.6 38 71.1


User provided reference genes

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