Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 4.1e-122 441.4 225 100.0
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 3.4e-116 421.8 219 98.2
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 9.8e-116 420.2 219 97.7
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 9.8e-108 393.7 204 98.5
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 5.4e-106 387.9 212 94.3
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 5.6e-71 271.6 213 65.7
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 8.4e-67 257.7 210 64.8
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.4e-66 256.9 209 65.1
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 2.7e-65 252.7 206 65.0
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 2.7e-65 252.7 206 62.6
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 6.0e-65 251.5 208 66.3
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 7.8e-65 251.1 207 65.7
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 1.3e-64 250.4 207 65.7
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 1.7e-64 250.0 211 63.5
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 3.0e-64 249.2 211 63.0
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 5.1e-64 248.4 227 58.1
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 5.1e-64 248.4 208 63.0
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 5.6e-63 245.0 212 62.3
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 3.6e-62 242.3 219 61.2
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 4.8e-62 241.9 209 61.2
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 4.8e-62 241.9 202 62.9
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 1.1e-61 240.7 220 57.7
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 1.4e-61 240.4 208 65.4
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 3.1e-61 239.2 205 62.9
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 3.1e-61 239.2 213 59.6
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 4.0e-61 238.8 208 62.5
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 9.0e-61 237.7 211 61.6
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 1.2e-60 237.3 203 62.1
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.6e-60 236.1 205 62.0
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 2.6e-60 236.1 238 54.6
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 3.4e-60 235.7 205 62.0
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 4.4e-60 235.3 212 57.5
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 7.6e-60 234.6 228 54.4
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 9.9e-60 234.2 210 61.9
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 9.9e-60 234.2 208 59.6
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 9.9e-60 234.2 211 62.1
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 3.8e-59 232.3 207 58.9
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 3.8e-59 232.3 219 59.4
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 4.9e-59 231.9 207 58.9
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 4.9e-59 231.9 217 55.3
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 8.4e-59 231.1 211 60.7
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.4e-58 230.3 212 56.1
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 2.4e-58 229.6 210 56.2
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 3.2e-58 229.2 207 57.0
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 5.4e-58 228.4 209 60.8
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 5.4e-58 228.4 206 56.8
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 7.1e-58 228.0 208 58.7
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.6e-57 226.9 228 54.4
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 2.7e-57 226.1 204 57.8
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 2.7e-57 226.1 206 55.8
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 2.7e-57 226.1 206 55.8
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 3.5e-57 225.7 205 56.6
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 3.5e-57 225.7 204 60.3
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 4.6e-57 225.3 216 57.9
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 4.6e-57 225.3 209 59.8
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 1.0e-56 224.2 206 57.8
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 3.0e-56 222.6 214 53.3
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 3.9e-56 222.2 204 56.4
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 3.3e-55 219.2 201 58.2
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 4.3e-55 218.8 208 57.7
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 1.3e-54 217.2 208 56.7
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.3e-54 217.2 206 56.3
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 4.0e-53 212.2 203 59.1
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 4.0e-53 212.2 205 55.1
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 5.3e-53 211.8 196 57.1
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 6.9e-53 211.5 199 55.3
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 1.2e-52 210.7 203 57.1
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.5e-52 210.3 208 55.8
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 4.5e-52 208.8 197 54.3
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 9.9e-52 207.6 203 56.7
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 1.7e-51 206.8 208 51.9
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 2.2e-51 206.5 205 57.1
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 2.9e-51 206.1 208 51.9
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 3.8e-51 205.7 208 51.9
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 4.9e-51 205.3 202 53.0
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 1.1e-50 204.1 201 56.7
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.9e-50 203.4 201 53.2
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 3.2e-50 202.6 205 51.7
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 5.5e-50 201.8 190 57.9
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 7.1e-50 201.4 208 49.0
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 1.8e-45 186.8 211 46.0
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 2.0e-44 183.3 187 51.3
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 1.3e-43 180.6 163 59.5
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 2.9e-43 179.5 158 60.1
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 4.9e-43 178.7 249 45.0
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 9.3e-42 174.5 203 46.3
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.6e-41 173.7 265 43.0
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 2.1e-41 173.3 186 48.4
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 2.7e-41 172.9 190 53.7
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 1.8e-37 160.2 205 44.4
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.6e-33 147.1 201 41.3
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 3.9e-32 142.5 160 45.6
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 4.3e-31 139.0 177 46.9
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.3e-30 137.5 160 46.2
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 9.0e-29 131.3 159 42.1
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 2.0e-28 130.2 151 50.3
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.2e-27 126.7 173 44.5
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 2.2e-27 126.7 125 53.6
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 2.1e-25 120.2 193 39.4
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 3.6e-25 119.4 148 47.3
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 6.3e-22 108.6 133 51.9
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.1e-21 107.8 167 39.5
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 5.3e-21 105.5 197 32.0
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 1.0e-19 101.3 156 38.5
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 5.7e-15 85.5 60 73.3
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 6.3e-14 82.0 98 42.9
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 4.5e-12 75.9 127 34.6
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 1.6e-09 67.4 106 38.7
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.1e-09 67.0 107 40.2
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 2.0e-07 60.5 56 58.9
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 9.7e-07 58.2 57 54.4


User provided reference genes

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