Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-89 333.2 170 100.0
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 5.3e-82 307.8 170 92.9
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.5e-81 304.7 176 90.9
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-79 300.1 170 92.4
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.8e-67 258.8 203 70.9
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 2.8e-67 258.8 173 81.5
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.1e-62 242.7 171 73.7
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.7e-62 242.3 171 74.3
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 2.0e-60 236.1 171 76.0
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 3.1e-58 228.8 169 72.8
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.0e-57 226.1 170 72.4
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.3e-56 223.4 174 72.4
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.9e-56 222.2 174 68.4
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 1.5e-55 219.9 160 71.9
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 3.3e-55 218.8 184 66.3
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 2.1e-54 216.1 185 65.4
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 4.7e-54 214.9 159 73.6
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 6.1e-54 214.5 167 68.3
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 8.0e-54 214.2 170 69.4
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 8.0e-54 214.2 161 72.0
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 1.0e-53 213.8 161 73.3
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.0e-53 213.8 170 70.6
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.0e-53 213.8 170 70.6
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.0e-53 213.8 167 67.1
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 1.4e-53 213.4 149 73.8
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 3.0e-53 212.2 146 75.3
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 3.0e-53 212.2 165 67.3
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 5.2e-53 211.5 166 68.1
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 6.8e-53 211.1 174 70.7
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 8.9e-53 210.7 126 81.0
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.5e-52 209.9 165 66.7
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 2.0e-52 209.5 126 80.2
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 4.4e-52 208.4 159 71.1
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.7e-52 208.0 158 71.5
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 7.5e-52 207.6 146 71.2
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.3e-51 206.8 158 74.1
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 4.9e-51 204.9 158 70.9
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 4.9e-51 204.9 162 69.1
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 6.4e-51 204.5 167 68.9
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 1.1e-50 203.8 153 71.9
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.4e-50 203.4 155 69.7
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 2.4e-50 202.6 155 67.7
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 3.2e-50 202.2 155 67.1
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.2e-50 202.2 147 68.0
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 4.1e-50 201.8 124 75.8
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 5.4e-50 201.4 146 68.5
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 5.4e-50 201.4 146 69.2
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 5.4e-50 201.4 146 69.2
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 9.2e-50 200.7 146 68.5
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 9.2e-50 200.7 148 68.2
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.2e-49 200.3 159 65.4
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 1.2e-49 200.3 161 65.8
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 1.2e-49 200.3 146 67.8
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.2e-49 200.3 126 80.2
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.6e-49 199.9 163 68.7
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 2.7e-49 199.1 147 70.7
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 2.7e-49 199.1 126 79.4
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 2.7e-49 199.1 160 69.4
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 3.5e-49 198.7 160 66.2
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 3.5e-49 198.7 159 70.4
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.5e-49 198.7 147 68.0
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.5e-49 198.7 147 68.0
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 4.6e-49 198.4 153 69.3
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 4.6e-49 198.4 149 69.8
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 4.6e-49 198.4 123 78.0
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 4.6e-49 198.4 147 68.0
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 4.6e-49 198.4 124 75.0
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 5.9e-49 198.0 159 71.1
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 5.9e-49 198.0 122 77.0
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 5.9e-49 198.0 126 79.4
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 7.8e-49 197.6 165 66.1
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 1.3e-48 196.8 160 63.8
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.7e-48 196.4 125 76.0
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.7e-48 196.4 153 66.0
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.3e-48 196.1 126 76.2
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 3.0e-48 195.7 155 66.5
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 3.0e-48 195.7 161 65.8
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 3.9e-48 195.3 156 65.4
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 3.9e-48 195.3 126 77.8
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 6.6e-48 194.5 155 65.2
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 6.6e-48 194.5 160 66.2
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 8.6e-48 194.1 125 73.6
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 8.6e-48 194.1 149 68.5
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 8.6e-48 194.1 156 68.6
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.1e-47 193.7 154 67.5
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.1e-47 193.7 154 65.6
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 1.5e-47 193.4 155 67.7
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.5e-47 193.4 163 67.5
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 2.5e-47 192.6 125 73.6
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.5e-47 192.6 161 65.8
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 3.3e-47 192.2 154 66.9
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 3.3e-47 192.2 120 74.2
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.3e-47 191.8 155 67.1
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 5.6e-47 191.4 160 64.4
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 7.3e-47 191.0 154 70.1
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 7.3e-47 191.0 125 76.8
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 7.3e-47 191.0 151 66.2
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 9.5e-47 190.7 156 69.2
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 2.1e-46 189.5 151 66.9
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.1e-46 189.5 122 75.4
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 2.8e-46 189.1 170 66.5
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 3.6e-46 188.7 154 66.2
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 4.7e-46 188.3 160 62.5
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.0e-45 187.2 161 64.0
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.8e-45 186.4 157 63.7
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 4.0e-45 185.3 119 77.3
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 2.6e-44 182.6 152 63.8
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.8e-44 181.4 120 73.3
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 7.5e-44 181.0 117 76.9
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 9.8e-44 180.6 145 65.5
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.7e-43 179.9 159 62.3
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 4.9e-43 178.3 120 70.0
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.9e-43 178.3 178 60.1
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.1e-42 177.2 105 81.0
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.1e-42 177.2 105 81.0
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.9e-42 176.4 116 71.6
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.0e-42 174.5 147 63.3
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.0e-42 174.5 147 61.9
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.0e-41 172.9 215 51.6
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.5e-41 172.2 115 70.4
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 4.6e-41 171.8 166 59.0
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 6.0e-41 171.4 156 59.6
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 6.0e-41 171.4 153 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 7.8e-41 171.0 139 63.3
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.8e-41 171.0 121 69.4
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.7e-40 169.9 115 70.4
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 1.9e-39 166.4 111 73.0
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 1.9e-39 166.4 103 78.6
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.3e-39 165.6 192 51.6
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.3e-39 165.2 163 58.3
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 1.2e-38 163.7 119 64.7
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 2.1e-38 162.9 151 60.3
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 3.6e-38 162.2 134 61.9
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 8.1e-38 161.0 128 65.6
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.1e-37 160.6 103 73.8
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 4.0e-37 158.7 173 57.8
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 5.2e-37 158.3 173 60.1
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 9.8e-36 154.1 157 56.1
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 3.7e-35 152.1 120 61.7
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.4e-34 149.4 155 57.4
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.4e-34 149.4 155 57.4
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 7.1e-34 147.9 116 62.9
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.2e-33 147.1 162 53.7
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-33 146.4 155 56.8
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.1e-31 140.6 96 69.8
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.4e-29 133.7 129 58.9
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 6.4e-27 124.8 107 61.7
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 5.4e-26 121.7 134 51.5
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.5e-25 119.0 77 76.6
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 2.5e-23 112.8 58 89.7
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.2e-22 110.5 82 68.3
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 3.6e-22 109.0 64 79.7
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 1.4e-21 107.1 121 46.3
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 5.2e-21 105.1 57 84.2
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 4.4e-20 102.1 129 53.5
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.7e-19 100.1 58 82.8
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 3.5e-17 92.4 76 59.2
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 1.3e-16 90.5 75 64.0
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 3.0e-16 89.4 76 57.9
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 3.9e-16 89.0 76 57.9
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.1e-15 87.4 64 64.1
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 1.3e-11 73.9 132 34.8
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 4.2e-10 68.9 138 35.5
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.6e-09 67.0 149 30.9
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 4.6e-09 65.5 39 74.4


User provided reference genes

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