Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 2.3e-134 482.3 247 100.0
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.2e-127 459.9 250 94.8
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 5.1e-126 454.5 245 95.9
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 1.4e-120 436.4 235 95.7
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 2.2e-113 412.5 251 86.5
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 3.3e-80 302.4 252 66.7
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 3.4e-77 292.4 264 64.4
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 1.3e-76 290.4 215 68.4
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 1.0e-73 280.8 243 62.1
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.3e-73 280.4 150 96.0
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 2.9e-73 279.3 243 63.4
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 8.0e-71 271.2 224 61.6
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 2.3e-70 269.6 229 62.9
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 3.1e-70 269.2 211 65.4
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 1.2e-69 267.3 234 60.7
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 2.6e-69 266.2 228 64.5
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 2.6e-69 266.2 217 63.1
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 5.8e-69 265.0 242 59.5
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 3.2e-67 259.2 206 62.1
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 7.0e-67 258.1 230 58.3
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 1.2e-66 257.3 223 59.6
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 1.6e-66 256.9 246 54.9
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 2.0e-66 256.5 210 61.9
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 1.0e-65 254.2 212 60.8
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 1.7e-65 253.4 266 55.3
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 2.3e-65 253.1 234 57.3
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 5.0e-65 251.9 209 61.2
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.1e-64 250.8 209 61.2
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 1.5e-64 250.4 212 60.8
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 1.5e-64 250.4 212 60.8
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 7.3e-64 248.1 209 60.8
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 4.7e-63 245.4 209 58.4
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 4.7e-63 245.4 206 58.3
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 1.4e-62 243.8 218 57.3
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 1.8e-62 243.4 243 53.9
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 2.3e-62 243.0 207 61.8
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 3.1e-62 242.7 220 55.9
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 3.1e-62 242.7 208 61.1
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 4.0e-62 242.3 220 57.7
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 4.0e-62 242.3 220 57.7
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 6.8e-62 241.5 220 56.8
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 8.9e-62 241.1 220 55.5
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 2.0e-61 240.0 239 52.3
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 3.4e-61 239.2 214 55.6
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 3.4e-61 239.2 214 55.6
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 4.4e-61 238.8 242 50.0
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 5.8e-61 238.4 220 55.0
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 7.5e-61 238.0 244 53.3
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 1.7e-60 236.9 214 57.5
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 1.7e-60 236.9 232 55.6
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 2.2e-60 236.5 240 51.7
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 2.9e-60 236.1 220 55.9
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 2.9e-60 236.1 201 58.7
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 3.7e-60 235.7 209 56.5
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 6.4e-60 235.0 237 53.2
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 8.3e-60 234.6 209 56.5
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 2.4e-59 233.0 238 52.1
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 3.2e-59 232.6 220 56.4
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 9.2e-59 231.1 260 51.2
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 2.7e-58 229.6 223 54.7
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.5e-58 229.2 209 55.5
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 6.0e-58 228.4 232 54.3
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 7.8e-58 228.0 248 50.0
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 7.8e-58 228.0 242 49.2
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 1.0e-57 227.6 208 55.3
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 2.3e-57 226.5 213 52.1
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 5.1e-57 225.3 206 54.9
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 6.6e-57 224.9 217 54.4
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 3.3e-56 222.6 224 54.9
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 4.3e-56 222.2 213 52.6
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 4.3e-56 222.2 213 52.6
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 2.8e-55 219.5 242 49.2
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.4e-54 217.2 219 51.6
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 1.8e-54 216.9 250 48.8
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 3.1e-54 216.1 215 51.2
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 3.1e-54 216.1 232 48.3
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 1.5e-53 213.8 220 48.2
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 2.0e-53 213.4 239 49.0
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.9e-51 206.8 208 50.5
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 5.4e-51 205.3 208 50.5
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 6.2e-47 191.8 198 52.0
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 2.0e-45 186.8 186 52.7
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 6.4e-44 181.8 308 36.4
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 1.1e-43 181.0 173 54.3
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 1.4e-43 180.6 233 44.6
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 7.1e-43 178.3 209 45.0
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 9.3e-43 177.9 206 47.1
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 9.3e-43 177.9 214 45.8
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 1.0e-41 174.5 205 43.9
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 6.6e-41 171.8 229 44.1
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 4.3e-40 169.1 207 41.5
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 3.1e-38 162.9 214 42.1
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 2.6e-37 159.8 161 52.2
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 4.4e-37 159.1 430 28.6
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 2.2e-36 156.8 208 43.8
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 8.7e-33 144.8 154 48.7
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 1.5e-32 144.1 208 39.9
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 2.5e-32 143.3 155 45.2
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 1.3e-31 141.0 159 49.1
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 1.3e-28 131.0 180 40.0
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 3.3e-24 116.3 107 52.3
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 3.3e-24 116.3 90 60.0
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 2.8e-23 113.2 199 37.7
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 7.9e-18 95.1 200 31.5
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 3.9e-09 66.2 89 41.6
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 5.1e-09 65.9 53 52.8
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 5.1e-09 65.9 50 62.0


User provided reference genes

Program Settings