Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 7.3e-214 746.9 362 100.0
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.1e-152 542.7 337 81.3
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 8.8e-151 537.3 340 80.9
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.3e-149 533.5 339 80.8
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 5.0e-138 495.0 339 74.9
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 1.4e-132 476.9 334 73.1
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 5.4e-132 474.9 354 69.8
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 2.9e-130 469.2 349 71.3
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 2.3e-122 443.0 343 65.9
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 1.9e-121 439.9 341 67.7
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 5.6e-121 438.3 341 66.3
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 8.0e-120 434.5 324 67.3
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.0e-119 434.1 320 68.1
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.0e-119 434.1 320 68.1
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 4.0e-119 432.2 359 64.6
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 6.8e-119 431.4 300 71.0
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 1.2e-118 430.6 328 67.4
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 1.5e-118 430.3 336 67.3
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 4.4e-118 428.7 291 71.5
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 7.5e-118 427.9 327 66.1
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 9.8e-118 427.6 239 82.8
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 1.7e-117 426.8 331 65.6
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 2.2e-117 426.4 328 66.8
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 3.7e-117 425.6 348 63.5
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 4.9e-117 425.2 328 66.5
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 4.9e-117 425.2 328 66.5
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 6.4e-117 424.9 326 65.3
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 8.3e-117 424.5 280 73.6
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 1.1e-116 424.1 317 66.2
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 1.4e-116 423.7 273 73.3
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 2.4e-116 422.9 357 63.6
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 2.4e-116 422.9 267 73.8
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 2.4e-116 422.9 320 65.6
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 3.2e-116 422.5 345 64.3
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 4.1e-116 422.2 336 64.9
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 4.1e-116 422.2 336 63.4
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 7.0e-116 421.4 317 66.2
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 7.0e-116 421.4 321 67.3
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 9.2e-116 421.0 333 63.7
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 1.2e-115 420.6 344 64.8
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 1.2e-115 420.6 297 69.4
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 1.2e-115 420.6 317 67.2
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 1.2e-115 420.6 279 71.0
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 1.6e-115 420.2 321 65.4
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 2.0e-115 419.9 344 62.8
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 2.0e-115 419.9 346 62.7
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 2.0e-115 419.9 326 65.6
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 4.6e-115 418.7 329 65.7
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 7.8e-115 417.9 336 62.8
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 1.0e-114 417.5 332 64.5
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 1.3e-114 417.2 344 62.5
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 1.7e-114 416.8 343 65.6
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 2.3e-114 416.4 346 62.7
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 3.9e-114 415.6 322 65.8
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 5.0e-114 415.2 320 64.7
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 6.6e-114 414.8 322 64.3
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 6.6e-114 414.8 327 64.2
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 8.6e-114 414.5 337 65.0
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 8.6e-114 414.5 347 64.3
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 8.6e-114 414.5 339 64.3
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 8.6e-114 414.5 336 61.9
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 1.5e-113 413.7 323 65.0
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 2.5e-113 412.9 329 63.8
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 4.3e-113 412.1 327 64.5
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 5.6e-113 411.8 328 63.1
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 9.5e-113 411.0 267 74.5
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 2.1e-112 409.8 282 70.6
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 2.8e-112 409.5 330 63.6
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.1e-111 407.5 313 66.5
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 1.8e-111 406.8 345 61.4
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 1.8e-111 406.8 345 62.0
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 3.1e-111 406.0 297 67.3
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 6.8e-111 404.8 336 64.0
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 3.4e-110 402.5 259 74.1
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 4.4e-110 402.1 324 63.3
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 9.9e-110 401.0 344 61.9
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 2.9e-109 399.4 341 60.7
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 3.7e-109 399.1 341 62.2
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 4.9e-109 398.7 349 60.7
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 8.3e-109 397.9 256 73.8
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 1.4e-108 397.1 344 60.8
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 1.4e-108 397.1 344 60.8
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 1.4e-108 397.1 344 60.8
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 1.4e-108 397.1 341 60.7
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 1.9e-108 396.7 256 73.4
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 4.1e-108 395.6 353 59.8
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 1.7e-106 390.2 262 72.5
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 1.7e-106 390.2 300 65.3
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 1.1e-105 387.5 337 60.8
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 2.5e-105 386.3 334 61.7
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 7.3e-105 384.8 330 60.9
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 2.8e-104 382.9 328 58.2
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 3.6e-104 382.5 318 61.0
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 5.8e-102 375.2 336 57.4
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 1.7e-101 373.6 255 70.2
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 4.6e-99 365.5 351 57.5
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 1.3e-98 364.0 313 61.3
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 3.4e-94 349.4 269 65.4
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 9.3e-92 341.3 313 56.9
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.5e-89 334.0 219 72.1
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 3.3e-89 332.8 335 54.3
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 4.8e-88 328.9 335 54.0
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 2.6e-86 323.2 219 67.6
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.3e-85 320.9 249 68.7
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 8.4e-85 318.2 437 46.9
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 2.3e-82 310.1 256 60.9
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 2.1e-80 303.5 258 58.5
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 1.1e-79 301.2 256 57.4
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 7.6e-78 295.0 291 52.9
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 1.3e-77 294.3 246 65.9
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 3.7e-72 276.2 228 61.8
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 1.9e-68 263.8 266 50.8
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 1.2e-67 261.2 275 50.9
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.8e-66 257.3 276 50.0
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.3e-66 256.9 194 63.9
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 4.1e-63 246.1 352 40.3
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 3.4e-54 216.5 215 58.1
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 1.9e-52 210.7 179 60.3
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 4.8e-48 196.1 201 52.2
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 3.6e-43 179.9 118 71.2
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 2.2e-37 160.6 143 62.9
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 8.0e-35 152.1 179 50.8
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 5.2e-34 149.4 116 63.8
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 1.2e-30 138.3 74 79.7
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 1.6e-30 137.9 332 29.5
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 2.5e-28 130.6 258 32.6
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 9.4e-28 128.6 286 32.9
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 2.1e-27 127.5 107 59.8
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 3.7e-24 116.7 258 30.2
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 4.5e-22 109.8 262 31.3
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 1.3e-21 108.2 253 32.0
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 2.5e-20 104.0 54 79.6
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 4.7e-19 99.8 54 77.8
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 5.7e-17 92.8 123 41.5
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 1.7e-16 91.3 48 83.3
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 2.4e-15 87.4 73 60.3
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 1.7e-13 81.3 104 52.9
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 8.6e-13 79.0 78 53.8
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 8.6e-13 79.0 69 58.0
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 8.6e-13 79.0 78 53.8
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 3.4e-09 67.0 142 34.5
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 1.7e-08 64.7 149 28.9
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 2.9e-08 63.9 50 72.0
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 3.2e-07 60.5 31 77.4
Actinidia16329 Actinidia chinensis HOM05D000001 ORTHO05D057168 2.7e-06 57.4 27 81.5
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 3.5e-06 57.0 31 80.6


User provided reference genes

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