Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 0.0e+00 1099.3 557 100.0
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.8e-312 1073.5 559 97.7
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.5e-285 984.9 556 90.5
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 5.3e-280 967.2 560 88.8
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.0e-279 965.3 577 86.8
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.7e-270 935.6 554 87.7
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.2e-244 849.7 561 79.9
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 2.4e-240 835.5 558 78.5
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 3.4e-234 815.1 553 74.7
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.7e-233 812.8 561 76.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 2.2e-233 812.4 560 73.9
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.9e-233 812.0 554 76.0
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.4e-232 808.9 551 76.2
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 5.4e-232 807.7 561 75.9
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 9.2e-232 807.0 548 76.1
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.6e-231 806.2 513 79.1
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 3.5e-231 805.1 553 74.9
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.0e-230 803.5 563 75.1
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.7e-230 802.7 560 74.5
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.9e-230 802.0 495 80.6
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 6.6e-230 800.8 529 76.6
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 5.6e-229 797.7 519 77.5
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 7.3e-229 797.3 553 75.0
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 9.5e-229 797.0 535 74.8
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 9.5e-229 797.0 547 73.7
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.6e-228 796.2 562 72.6
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.1e-228 795.8 552 75.2
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.1e-228 795.8 547 73.5
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.8e-228 795.4 551 74.8
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 3.6e-228 795.0 496 80.0
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.6e-228 795.0 504 79.0
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 4.7e-228 794.7 551 74.2
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 4.7e-228 794.7 547 73.3
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 6.1e-228 794.3 558 73.5
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 8.0e-228 793.9 562 72.6
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.8e-227 792.7 498 79.3
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 5.2e-227 791.2 520 76.0
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 6.8e-227 790.8 494 79.6
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.2e-226 790.0 560 72.0
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 1.5e-226 789.6 551 73.5
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.0e-226 789.3 543 74.6
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 4.4e-226 788.1 548 73.9
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 9.8e-226 786.9 532 74.2
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.7e-225 786.2 562 72.8
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.7e-225 786.2 548 74.1
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.9e-225 785.4 557 71.3
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 6.4e-225 784.3 566 72.4
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.1e-224 783.5 548 74.3
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.4e-224 783.1 493 78.5
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.9e-224 782.7 560 72.1
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.4e-224 782.3 551 73.0
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 3.2e-224 781.9 550 73.1
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 7.0e-224 780.8 519 76.5
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 4.6e-223 778.1 517 75.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 6.0e-223 777.7 493 78.1
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 7.8e-223 777.3 548 72.4
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.0e-222 776.9 490 77.6
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.0e-222 775.4 555 71.7
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 3.9e-222 775.0 510 76.3
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 5.0e-222 774.6 503 76.3
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 8.6e-222 773.9 538 74.3
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 8.6e-222 773.9 552 71.9
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 7.3e-221 770.8 556 71.4
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.2e-220 770.0 559 71.7
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 2.8e-220 768.8 520 74.8
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 3.6e-220 768.5 551 71.9
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.6e-220 768.5 543 71.1
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 4.7e-220 768.1 552 71.6
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 6.2e-220 767.7 505 75.4
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.1e-219 766.9 553 71.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.1e-219 766.9 554 70.9
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.4e-219 766.5 523 73.8
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 5.8e-218 761.1 553 71.8
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 9.8e-218 760.4 502 75.9
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.7e-217 759.6 502 75.9
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.2e-217 759.2 599 66.8
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.7e-217 758.4 493 76.5
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.4e-216 756.5 498 74.9
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.4e-216 756.5 545 70.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.4e-216 755.7 501 74.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 7.1e-216 754.2 493 76.9
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.0e-214 750.4 584 67.6
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 1.0e-214 750.4 590 68.1
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 3.9e-214 748.4 493 74.4
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 3.9e-214 748.4 539 69.9
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.9e-214 748.4 496 74.0
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 5.1e-214 748.0 537 71.1
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 8.6e-214 747.3 493 74.2
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.9e-213 746.1 493 74.0
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 7.3e-213 744.2 493 74.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.1e-212 742.7 493 73.8
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-211 740.0 493 73.6
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.3e-211 739.2 499 73.1
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.5e-210 736.5 541 69.1
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.8e-210 734.6 536 70.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 7.6e-210 734.2 541 68.8
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.2e-209 732.6 493 73.2
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.9e-209 732.3 570 67.7
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.1e-207 726.1 514 70.6
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.0e-206 723.8 561 68.1
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 3.0e-206 722.2 532 69.5
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-205 720.3 560 70.9
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 6.8e-203 711.1 526 69.8
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 5.8e-202 708.0 493 69.8
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 5.4e-200 701.4 504 68.3
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.2e-199 700.3 511 67.7
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.8e-195 686.4 493 70.2
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 3.1e-195 685.6 505 67.3
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.3e-195 684.9 446 75.3
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 3.4e-194 682.2 504 67.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.9e-193 679.1 439 77.0
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 4.9e-193 678.3 447 79.0
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 6.4e-193 677.9 493 69.4
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.4e-192 676.8 449 77.7
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 5.4e-192 674.9 458 77.5
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 6.0e-191 671.4 497 69.4
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-189 667.2 401 85.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 8.4e-185 651.0 510 66.1
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.2e-184 649.0 407 79.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 4.3e-181 638.6 407 77.6
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-179 634.0 527 62.8
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-178 630.6 547 63.3
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.1e-176 624.0 763 48.6
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.5e-173 612.8 487 61.8
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.2e-167 594.0 490 64.7
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-166 590.9 459 65.8
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.3e-166 589.7 528 58.9
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.9e-161 572.8 338 84.9
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.4e-150 537.3 442 67.9
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.5e-117 427.6 317 69.7
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.3e-116 424.5 288 75.7
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 5.2e-110 402.5 269 76.2
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.3e-100 371.3 326 60.4
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 4.7e-95 352.8 250 72.8
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 3.9e-89 333.2 492 38.6
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.8e-87 327.0 200 80.0
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 4.9e-84 316.2 494 37.2
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.9e-83 314.3 507 35.9
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.8e-79 300.4 230 66.1
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 1.5e-61 241.5 134 87.3
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 7.1e-59 232.6 434 37.6
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 7.9e-58 229.2 204 62.3
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 3.1e-54 217.2 165 68.5
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 5.0e-52 209.9 204 56.9
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-49 201.8 230 50.4
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.4e-43 181.8 98 87.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 9.4e-43 179.1 283 40.3
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.3e-41 174.5 91 91.2
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 9.7e-40 169.1 156 55.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 8.2e-39 166.0 344 31.1
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.8e-38 164.9 165 50.9
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.6e-34 151.8 110 65.5
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.7e-34 151.0 156 54.5
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 5.2e-33 146.7 81 87.7
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 4.8e-31 140.2 93 77.4
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.0e-29 134.8 74 87.8
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.1e-26 124.8 100 65.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.4e-25 122.1 121 57.9
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 4.8e-23 113.6 143 44.1
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 5.9e-21 106.7 113 57.5
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-13 82.0 56 60.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.1e-11 75.9 41 80.5
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.2e-10 72.4 47 70.2
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.6e-10 72.0 43 74.4
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 1.4e-06 58.9 42 71.4
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 1.8e-06 58.5 35 74.3


User provided reference genes

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