Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 7.4e-121 437.6 281 100.0
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.4e-79 300.4 278 67.3
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.4e-79 300.4 278 67.3
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 1.4e-74 283.9 269 65.8
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 1.2e-73 280.8 269 64.3
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 3.1e-71 272.7 260 65.0
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.5e-68 263.1 278 59.7
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 9.8e-65 251.1 303 59.4
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 4.9e-64 248.8 270 65.9
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 2.4e-63 246.5 266 58.6
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 3.1e-63 246.1 268 56.3
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 5.2e-58 228.8 278 60.4
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.5e-57 227.3 255 66.3
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 4.4e-57 225.7 267 59.2
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 2.9e-56 223.0 252 57.1
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 3.7e-56 222.6 255 61.2
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 4.9e-56 222.2 254 61.0
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 6.4e-56 221.9 278 56.8
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 6.4e-56 221.9 255 56.5
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 6.4e-56 221.9 251 55.0
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 6.4e-56 221.9 251 53.4
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 1.8e-55 220.3 251 53.4
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 2.4e-55 219.9 268 54.9
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 2.4e-55 219.9 268 54.5
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 3.2e-55 219.5 270 66.7
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 5.4e-55 218.8 255 56.9
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 7.0e-55 218.4 255 54.1
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 9.2e-55 218.0 255 55.7
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 9.2e-55 218.0 254 59.8
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.2e-54 217.6 269 53.9
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 1.2e-54 217.6 257 56.8
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 1.2e-54 217.6 254 56.7
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.2e-54 217.6 254 56.7
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 1.2e-54 217.6 255 64.7
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.2e-54 217.6 257 61.1
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 2.0e-54 216.9 259 55.2
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 3.5e-54 216.1 268 53.7
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 3.5e-54 216.1 255 55.7
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 6.0e-54 215.3 254 55.9
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 7.8e-54 214.9 254 55.5
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 7.8e-54 214.9 254 55.5
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 7.8e-54 214.9 256 59.4
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 7.8e-54 214.9 254 56.3
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 7.8e-54 214.9 254 55.9
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 7.8e-54 214.9 264 59.8
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.0e-53 214.5 271 54.2
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.3e-53 214.2 255 55.7
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 1.7e-53 213.8 254 55.9
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 2.3e-53 213.4 270 52.6
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 5.0e-53 212.2 259 53.7
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 6.6e-53 211.8 252 54.0
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 1.1e-52 211.1 254 56.3
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 1.5e-52 210.7 257 55.3
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 2.5e-52 209.9 255 54.5
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 4.3e-52 209.1 282 51.4
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 5.6e-52 208.8 254 53.5
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 7.3e-52 208.4 271 51.7
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 9.5e-52 208.0 254 53.5
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 1.2e-51 207.6 280 49.6
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 2.8e-51 206.5 264 51.5
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 2.8e-51 206.5 254 54.3
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 2.8e-51 206.5 254 54.3
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 2.8e-51 206.5 254 54.3
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 3.6e-51 206.1 254 53.9
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 3.6e-51 206.1 254 53.9
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 6.2e-51 205.3 254 55.1
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 6.2e-51 205.3 252 61.9
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 1.4e-50 204.1 255 54.5
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 2.3e-50 203.4 280 49.3
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 2.3e-50 203.4 252 53.6
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 3.1e-50 203.0 255 53.7
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 4.0e-50 202.6 292 53.1
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 4.0e-50 202.6 252 52.4
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 6.8e-50 201.8 241 56.0
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 6.8e-50 201.8 283 50.5
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 1.2e-49 201.1 251 51.8
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 2.0e-49 200.3 255 53.3
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 3.4e-49 199.5 256 53.5
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 7.5e-49 198.4 232 59.9
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 7.5e-49 198.4 234 63.2
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 3.7e-48 196.1 252 54.0
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 4.9e-48 195.7 257 52.1
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 4.1e-47 192.6 252 58.3
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.2e-46 191.0 229 54.1
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.2e-46 191.0 269 48.7
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.8e-43 179.9 111 79.3
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.4e-42 177.6 217 55.3
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 2.6e-41 173.3 230 51.3
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 5.8e-41 172.2 104 80.8
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 2.9e-40 169.9 252 46.8
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 3.7e-40 169.5 255 45.1
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 1.3e-37 161.0 88 89.8
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 2.3e-37 160.2 85 90.6
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 3.9e-37 159.5 84 89.3
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 5.1e-37 159.1 264 43.2
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 8.6e-37 158.3 217 51.6
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.1e-36 157.9 89 85.4
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.1e-36 157.9 89 85.4
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 2.5e-36 156.8 85 88.2
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 6.6e-21 105.5 71 77.5
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 1.5e-20 104.4 68 80.9
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.9e-20 104.0 177 41.8
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 4.3e-20 102.8 68 77.9
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 9.6e-20 101.7 74 73.0
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 1.3e-19 101.3 238 40.3
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.4e-18 97.8 67 77.6
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 4.9e-16 89.4 60 78.3
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 1.4e-15 87.8 218 42.2
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.5e-12 77.8 45 82.2
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.9e-12 77.4 72 61.1
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 3.4e-09 66.6 44 70.5
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 1.3e-08 64.7 89 49.4
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 4.2e-07 59.7 49 63.3
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 2.1e-06 57.4 53 56.6


User provided reference genes

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