Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 0.0e+00 1109.7 538 100.0
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 0.0e+00 1085.9 539 98.1
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 0.0e+00 1085.5 539 98.1
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 0.0e+00 1082.0 539 97.6
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.6e-297 1025.4 526 95.8
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 6.7e-288 993.4 540 91.9
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 9.7e-263 909.8 544 82.4
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 2.2e-262 908.7 547 82.8
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 4.8e-262 907.5 544 82.7
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.5e-247 859.4 539 77.0
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.6e-244 849.4 571 74.4
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 4.7e-241 837.8 547 75.5
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 6.1e-241 837.4 514 78.4
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 8.8e-240 833.6 543 76.1
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 1.5e-239 832.8 471 83.9
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 3.4e-239 831.6 534 75.7
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.4e-237 826.2 489 80.4
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 1.4e-237 826.2 545 75.2
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 4.1e-237 824.7 465 83.4
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 5.4e-237 824.3 465 84.5
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 7.0e-237 823.9 466 83.0
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 2.0e-236 822.4 534 74.9
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.2e-233 813.1 468 81.8
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 1.6e-233 812.8 471 81.5
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 2.8e-233 812.0 471 81.1
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.3e-232 808.9 465 82.2
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 3.0e-232 808.5 550 73.3
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 3.0e-232 808.5 540 73.0
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 7.5e-231 803.9 550 72.2
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.7e-230 801.6 567 71.1
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 1.1e-229 800.0 460 82.0
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 1.4e-229 799.7 538 72.1
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 1.8e-229 799.3 474 79.7
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 3.1e-229 798.5 534 72.3
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 4.1e-229 798.1 620 66.6
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 2.0e-228 795.8 497 76.7
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 3.5e-228 795.0 539 72.9
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 1.0e-227 793.5 535 73.1
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 1.7e-227 792.7 461 80.5
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 1.7e-227 792.7 537 72.3
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.1e-226 790.0 528 72.3
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 1.5e-226 789.6 539 71.2
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 2.5e-226 788.9 471 79.2
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 3.3e-226 788.5 541 72.8
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 2.8e-225 785.4 544 70.0
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 3.6e-225 785.0 534 72.1
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 1.0e-224 783.5 538 71.0
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.0e-224 783.5 542 70.7
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 1.0e-224 783.5 487 76.0
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 1.4e-224 783.1 515 73.2
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 5.2e-224 781.2 463 79.5
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 6.8e-224 780.8 539 72.0
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 6.8e-224 780.8 469 79.7
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 2.0e-223 779.2 537 70.2
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.6e-223 778.9 544 72.1
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 2.9e-222 775.4 622 64.6
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 2.9e-222 775.4 537 70.9
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 3.7e-222 775.0 465 78.1
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.9e-222 774.6 471 77.9
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 6.4e-222 774.2 520 71.9
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 8.3e-222 773.9 515 72.6
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 8.3e-222 773.9 539 69.8
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 1.4e-221 773.1 539 70.5
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 1.4e-221 773.1 537 68.7
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 2.4e-221 772.3 472 77.1
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 3.2e-221 771.9 481 76.1
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.7e-220 768.8 540 70.6
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 2.7e-220 768.8 461 77.9
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 6.0e-220 767.7 472 76.3
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 6.0e-220 767.7 471 75.8
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 7.8e-220 767.3 534 71.5
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 7.8e-220 767.3 546 68.9
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 1.5e-218 763.1 512 71.7
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 4.3e-218 761.5 507 72.6
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 7.3e-218 760.8 540 69.1
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.8e-217 758.8 539 70.3
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 6.2e-217 757.7 549 69.8
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 1.1e-216 756.9 533 69.2
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.8e-216 756.1 515 70.3
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 6.8e-216 754.2 560 68.2
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 1.5e-215 753.1 543 67.6
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 2.0e-215 752.7 494 74.3
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 5.8e-215 751.1 536 68.8
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 5.8e-215 751.1 475 74.7
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 9.8e-215 750.4 534 68.5
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 4.1e-213 745.0 533 69.6
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 7.0e-213 744.2 533 69.6
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 4.6e-212 741.5 451 76.5
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 6.0e-212 741.1 471 73.2
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 1.7e-211 739.6 461 76.4
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 1.8e-208 729.6 493 72.2
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 3.7e-206 721.8 461 73.5
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 1.6e-204 716.5 659 58.3
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 2.1e-204 716.1 517 68.3
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 5.1e-203 711.4 462 74.5
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 5.6e-202 708.0 436 75.2
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 5.2e-200 701.4 455 74.1
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 8.9e-200 700.7 421 77.7
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.6e-199 699.1 490 69.0
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 3.4e-199 698.7 421 77.4
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 6.4e-198 694.5 490 68.8
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.7e-195 686.4 471 69.9
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 2.5e-194 682.6 458 70.7
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 3.3e-194 682.2 466 73.2
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 3.6e-193 678.7 442 73.1
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 2.5e-186 656.0 421 73.9
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 1.3e-185 653.7 462 66.0
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 2.8e-185 652.5 464 65.1
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 3.4e-183 645.6 465 66.5
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 7.1e-181 637.9 464 65.1
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 2.5e-178 629.4 464 64.2
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 2.8e-177 625.9 447 66.2
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 6.2e-177 624.8 473 62.6
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 4.5e-175 618.6 459 64.9
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 2.5e-173 612.8 462 64.9
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.1e-170 604.0 463 63.7
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 5.3e-168 595.1 472 64.4
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.8e-167 591.7 358 78.8
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 7.9e-164 581.3 458 60.9
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 1.2e-159 567.4 487 58.5
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 2.0e-151 540.0 472 57.2
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 3.0e-139 499.6 355 69.0
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 5.2e-139 498.8 311 76.2
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 1.0e-118 431.4 503 47.9
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.3e-118 431.0 421 51.5
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 8.9e-115 418.3 331 64.7
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.5e-114 417.5 316 66.1
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 3.4e-114 416.4 255 74.9
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.3e-101 372.9 261 69.0
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.6e-100 370.9 372 54.8
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-87 328.2 281 55.9
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 7.3e-85 318.9 239 67.8
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 7.3e-85 318.9 214 67.8
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.6e-76 291.2 242 58.7
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 3.5e-71 273.5 209 69.9
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 6.2e-60 236.1 144 79.2
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 2.1e-52 211.1 164 62.2
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 7.4e-45 186.0 113 74.3
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 1.3e-44 185.3 178 57.9
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 3.1e-43 180.6 183 55.2
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 7.7e-42 176.0 100 84.0
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.8e-38 164.9 91 78.0
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 9.7e-37 159.1 115 69.6
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.9e-34 149.8 152 53.9
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 5.7e-21 106.7 113 55.8
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 3.6e-15 87.4 61 57.4
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 1.2e-13 82.4 49 81.6
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 1.2e-13 82.4 49 81.6
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 2.2e-12 78.2 58 70.7
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 4.5e-10 70.5 57 57.9
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 4.2e-08 63.9 60 60.0
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 7.2e-08 63.2 103 45.6


User provided reference genes

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