Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.3e-293 1011.1 575 100.0
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.4e-285 983.4 579 94.6
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.8e-284 981.5 579 94.6
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.5e-280 968.4 579 93.8
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 4.2e-280 967.6 579 93.8
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 2.7e-247 858.6 580 86.6
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.1e-190 670.6 574 63.9
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 4.8e-183 645.2 581 60.9
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.0e-144 516.9 555 52.6
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.4e-144 515.8 582 50.9
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 9.1e-142 508.1 578 53.3
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 9.1e-142 508.1 571 54.8
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.2e-141 507.7 573 56.4
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.5e-139 500.7 574 52.6
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 4.7e-138 495.7 591 49.1
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.4e-137 494.2 462 58.9
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 4.0e-137 492.7 576 55.7
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 7.5e-136 488.4 564 52.5
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 2.7e-133 479.9 563 48.1
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 3.5e-133 479.6 574 48.1
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.8e-132 476.1 565 47.4
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 6.5e-132 475.3 536 48.9
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.1e-131 474.6 573 47.8
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.5e-131 474.2 565 46.7
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 7.2e-131 471.9 570 48.2
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 9.4e-131 471.5 578 46.9
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.6e-130 470.7 575 47.3
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.1e-130 470.3 512 51.6
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 2.7e-130 469.9 567 51.3
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 2.7e-130 469.9 571 52.0
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 4.7e-130 469.2 579 49.4
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 8.8e-129 464.9 570 49.6
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.5e-128 464.2 576 48.6
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 5.7e-128 462.2 589 46.2
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 7.5e-128 461.8 573 48.0
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.2e-127 460.3 570 47.2
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 6.3e-127 458.8 583 47.5
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.8e-126 457.2 557 46.0
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 2.7e-125 453.4 576 45.3
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.7e-125 451.8 558 48.7
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.3e-124 451.1 572 52.6
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 8.5e-124 448.4 567 49.2
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.1e-123 448.0 572 45.6
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.1e-123 448.0 572 45.6
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.2e-123 446.4 569 51.3
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 4.2e-123 446.0 540 46.7
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 5.5e-123 445.7 645 45.0
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-122 444.1 585 47.4
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.1e-122 443.7 570 51.2
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 8.0e-122 441.8 550 49.1
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.0e-121 439.9 572 47.4
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.8e-121 438.7 574 48.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 3.4e-120 436.4 585 47.2
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.8e-119 433.3 577 46.6
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 4.9e-119 432.6 569 44.5
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.1e-118 431.4 577 44.4
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.4e-118 430.3 584 43.5
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 7.0e-118 428.7 576 43.2
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 5.9e-117 425.6 579 42.8
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 7.7e-117 425.2 539 44.5
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.0e-116 424.9 572 44.9
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.0e-116 424.9 579 47.5
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.7e-116 424.1 573 44.7
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 2.9e-116 423.3 516 45.2
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 3.3e-115 419.9 581 43.2
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 7.3e-115 418.7 586 49.0
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.6e-114 417.5 560 45.5
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 2.1e-114 417.2 577 45.6
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.6e-114 416.4 557 43.1
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-113 414.8 596 45.8
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 2.2e-111 407.1 580 48.1
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 4.9e-111 406.0 579 45.6
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.8e-110 404.1 559 42.9
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.1e-110 402.9 565 47.3
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.2e-109 401.4 560 45.2
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 5.9e-109 399.1 588 44.7
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.3e-108 397.9 554 42.6
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 3.9e-108 396.4 501 52.1
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 3.9e-108 396.4 574 48.6
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 3.3e-107 393.3 550 42.2
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 3.3e-107 393.3 574 48.4
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 4.3e-107 392.9 543 42.5
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 7.3e-107 392.1 551 42.5
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 3.6e-106 389.8 585 41.4
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 4.0e-105 386.3 574 47.7
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.8e-105 385.6 580 44.1
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.4e-104 383.3 577 41.4
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 3.4e-104 383.3 557 41.7
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 4.4e-104 382.9 543 41.1
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.4e-102 377.9 574 41.3
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.6e-101 374.4 568 43.0
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 2.8e-98 363.6 573 40.0
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 4.7e-98 362.8 559 42.6
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 6.2e-98 362.5 559 40.3
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 8.1e-98 362.1 561 39.4
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 2.3e-97 360.5 561 39.2
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 3.4e-96 356.7 544 39.2
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 4.4e-96 356.3 563 42.1
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 7.5e-96 355.5 566 40.8
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.3e-95 354.8 542 41.7
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.7e-95 354.4 458 52.2
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 2.2e-95 354.0 597 40.2
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 3.7e-95 353.2 561 38.7
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.4e-95 352.4 453 46.8
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 4.1e-94 349.7 569 40.8
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 7.1e-94 349.0 533 40.2
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.5e-93 346.7 392 48.2
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 2.3e-92 344.0 561 38.1
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 5.1e-92 342.8 557 40.0
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 5.1e-92 342.8 561 38.1
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 7.6e-88 328.9 457 47.3
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.7e-87 327.8 566 37.5
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 6.4e-87 325.9 580 37.1
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 2.7e-85 320.5 564 38.1
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.0e-84 318.5 567 39.0
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-84 318.5 367 48.8
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 2.3e-84 317.4 463 43.6
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 5.6e-83 312.8 272 59.9
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 8.1e-82 308.9 569 37.3
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 9.9e-80 302.0 557 37.3
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.3e-79 301.6 427 44.3
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.3e-79 301.6 472 43.0
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 6.6e-76 289.3 266 56.8
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.1e-74 284.3 380 46.6
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 3.6e-74 283.5 542 43.0
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 1.2e-72 278.5 458 41.0
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 5.1e-60 236.5 534 32.0
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 7.4e-59 232.6 248 51.6
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.2e-54 217.2 443 34.5
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.0e-52 210.7 303 42.6
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.1e-51 208.8 414 33.1
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 7.4e-51 206.1 247 51.4
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.9e-43 181.4 249 41.4
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 4.6e-37 160.2 316 33.2
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 3.0e-36 157.5 401 35.2
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.8e-36 156.0 245 42.4
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.9e-33 146.4 158 51.3
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-32 145.6 158 51.3
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 1.1e-30 139.0 157 47.8
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.2e-29 135.6 161 43.5
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 5.7e-27 126.7 561 25.1
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 5.7e-27 126.7 570 21.1
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 4.8e-26 123.6 458 23.6
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.3e-26 123.2 116 53.4
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.1e-25 120.9 121 48.8
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.1e-25 120.6 146 44.5
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-24 118.6 149 40.9
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.2e-22 110.9 106 52.8
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.2e-21 109.0 163 41.7
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.1e-21 108.2 160 41.2
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 3.6e-21 107.5 585 22.7
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 6.1e-21 106.7 521 23.0
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-20 105.9 200 36.5
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 7.5e-19 99.8 526 24.3
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 7.5e-19 99.8 120 44.2
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 6.3e-18 96.7 70 65.7
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 8.2e-18 96.3 117 48.7
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 3.1e-17 94.4 162 34.0
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 7.0e-17 93.2 73 63.0
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 7.0e-17 93.2 133 37.6
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.0e-16 91.7 73 69.9
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-15 89.0 151 35.8
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.9e-15 87.8 80 57.5
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 1.1e-14 85.9 142 36.6
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 3.2e-14 84.3 131 36.6
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 4.7e-13 80.5 111 37.8
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.4e-12 79.0 58 67.2
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.0e-12 77.4 83 51.8
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 8.8e-12 76.3 120 42.5
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 3.4e-11 74.3 528 20.1
Cfa026082 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.1e-09 69.3 538 20.3
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.4e-09 68.9 123 37.4
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.8e-09 68.6 120 33.3
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 4.1e-09 67.4 73 45.2
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.7e-08 64.7 65 55.4
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.7e-08 64.7 65 55.4
RcHm_v2.0_Chr4g0408691 Rosa chinensis HOM05D003578 ORTHO05D004021 5.9e-08 63.5 72 54.2
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 7.7e-08 63.2 84 36.9
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.3e-07 62.4 123 38.2
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.7e-07 62.0 131 37.4
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 2.3e-07 61.6 190 25.3
SEGI_10534 Sequoiadendron giganteum HOM05D014588 ORTHO05D004021 1.5e-06 58.9 81 40.7


User provided reference genes

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