Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1513.8 783 100.0
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1436.8 753 98.9
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1429.1 761 97.6
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1428.7 761 96.2
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1374.8 768 94.1
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 0.0e+00 1318.5 707 97.6
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1307.4 768 88.5
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1304.7 768 88.2
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1197.2 740 82.3
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1196.0 737 83.4
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1191.0 786 78.6
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1188.7 736 81.5
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1188.7 731 82.2
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1187.9 804 76.7
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1186.0 779 78.0
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1186.0 775 79.5
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1180.6 771 79.1
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1179.5 779 77.9
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1179.1 779 77.5
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1177.9 729 81.8
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1176.4 730 82.7
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1175.6 775 78.8
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1174.5 738 81.2
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1167.5 736 80.7
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1160.6 725 81.2
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1154.0 709 83.2
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1153.7 769 77.2
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1150.2 729 80.8
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1148.7 777 76.6
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1143.6 777 75.4
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1143.3 779 76.0
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1142.9 795 74.5
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1142.1 780 75.6
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1140.9 738 78.2
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1140.6 772 75.8
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1139.0 730 78.9
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1138.6 762 76.4
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1137.5 721 79.6
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1130.5 790 74.2
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1129.8 790 74.2
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1127.1 790 73.9
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1122.8 771 75.7
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1119.0 776 74.2
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1117.1 724 78.7
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1112.8 738 77.2
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1112.4 770 75.5
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1107.8 715 79.0
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1103.2 826 71.1
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1102.8 697 80.1
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1102.4 735 76.2
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1100.1 821 70.8
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1100.1 789 73.3
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1079.7 707 77.8
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1079.3 780 72.4
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.1e-311 1072.8 719 77.6
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 2.1e-311 1072.0 780 72.3
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 8.0e-311 1070.1 725 74.8
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 8.0e-311 1070.1 776 70.9
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 1.8e-310 1068.9 750 74.4
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 4.1e-310 1067.8 745 74.6
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 5.8e-309 1063.9 776 71.5
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 7.6e-309 1063.5 730 74.2
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 2.9e-308 1061.6 805 69.3
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 8.4e-308 1060.1 781 71.4
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.1e-306 1055.4 651 81.4
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.1e-306 1055.4 727 74.7
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 3.5e-306 1054.7 780 70.8
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 3.5e-306 1054.7 780 70.8
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 4.6e-306 1054.3 765 73.6
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 5.1e-305 1050.8 781 71.4
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 6.7e-305 1050.4 765 71.8
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.1e-304 1049.7 779 71.6
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 2.5e-304 1048.5 726 74.4
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 4.3e-304 1047.7 772 71.6
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 5.7e-304 1047.3 777 70.8
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 7.4e-304 1047.0 777 71.2
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 9.7e-304 1046.6 779 71.0
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 1.3e-303 1046.2 778 71.0
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.2e-301 1039.6 848 66.2
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 2.0e-301 1038.9 810 68.8
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 3.4e-301 1038.1 714 75.6
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 5.9e-301 1037.3 723 73.9
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 1.3e-300 1036.2 766 71.4
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 2.2e-300 1035.4 776 71.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 3.8e-300 1034.6 776 70.9
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.1e-299 1033.1 766 71.3
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 3.2e-299 1031.6 766 70.5
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.2e-298 1029.6 770 69.7
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 3.6e-298 1028.1 780 69.4
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 4.6e-298 1027.7 778 70.1
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 1.7e-292 1009.2 718 72.6
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.5e-288 996.1 728 70.9
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 8.2e-287 990.3 727 69.7
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.4e-286 988.8 698 74.4
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.0e-284 983.4 731 69.4
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 4.8e-279 964.5 728 69.4
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.9e-259 899.4 623 77.2
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 4.6e-245 851.7 562 75.8
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.8e-245 850.9 562 76.0
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 2.0e-240 836.3 751 58.9
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 2.3e-233 812.8 713 57.9
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 7.6e-232 807.7 726 57.7
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 1.6e-229 800.0 714 59.4
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 4.4e-224 781.9 541 68.0
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 1.1e-222 777.3 717 58.4
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 2.7e-213 746.1 531 67.0
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 5.1e-212 741.9 531 67.4
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.8e-199 699.1 536 64.0
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 5.0e-191 672.2 414 79.5
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.4e-177 626.7 403 78.4
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.5e-166 590.1 414 68.1
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 4.0e-148 529.6 343 77.6
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 7.5e-131 472.2 269 83.6
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.4e-105 388.3 702 36.6
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 3.1e-100 370.5 491 42.8
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 4.6e-96 356.7 269 63.6
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 5.6e-94 349.7 626 40.6
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 6.2e-93 346.3 278 65.5
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.0e-79 302.4 275 62.9
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 8.8e-71 272.7 691 31.0
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.3e-69 268.9 349 48.1
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.0e-39 169.5 99 77.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 8.3e-37 159.8 83 85.5
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.4e-31 142.5 132 60.6
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.2e-30 139.4 104 68.3
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.6e-30 138.3 134 56.7
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 4.9e-21 107.5 54 83.3
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 5.4e-20 104.0 130 46.9
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 5.0e-18 97.4 122 45.1
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.0e-14 85.5 58 67.2
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 4.6e-11 74.3 74 59.5
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 6.0e-11 73.9 41 82.9
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 2.1e-08 65.5 69 56.5
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.4e-07 62.8 80 47.5
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 2.3e-07 62.0 258 25.2
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 8.9e-07 60.1 254 24.8
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 8.9e-07 60.1 80 42.5
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 2.0e-06 58.9 276 26.8
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 4.4e-06 57.8 381 23.1
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 5.8e-06 57.4 271 24.0
Migut.J01799 Erythranthe guttata HOM05D008447 ORTHO05D010638 9.9e-06 56.6 254 24.8


User provided reference genes

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