Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3408 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.7e-78 295.8 140 100.0
FAN03G0454 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.5e-45 186.4 103 90.3
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 2.4e-11 72.8 45 68.9
Thhalv10005421m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.0e-09 67.4 47 57.4
Sp2g23500 Schrenkiella parvula HOM05D002077 ORTHO05D000818 2.9e-09 65.9 47 59.6
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 2.9e-09 65.9 48 62.5
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 6.5e-09 64.7 48 60.4
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 1.1e-08 63.9 48 54.2
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 1.4e-08 63.5 48 60.4
RcHm_v2.0_Chr1g0377091 Rosa chinensis HOM05D002077 ORTHO05D000818 1.4e-08 63.5 48 58.3
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 1.9e-08 63.2 48 58.3
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 1.9e-08 63.2 48 58.3
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 1.9e-08 63.2 48 58.3
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 1.9e-08 63.2 48 58.3
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 3.2e-08 62.4 48 54.2
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 4.2e-08 62.0 48 58.3
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 4.2e-08 62.0 48 58.3
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 5.5e-08 61.6 78 39.7
AL6G35000 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 7.2e-08 61.2 47 53.2
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 7.2e-08 61.2 47 53.2
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 7.2e-08 61.2 47 53.2
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 7.2e-08 61.2 47 53.2
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 7.2e-08 61.2 47 53.2
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 7.2e-08 61.2 47 53.2
CSS0046422 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 7.2e-08 61.2 48 58.3
FvH4_7g29340 Fragaria vesca HOM05D002077 ORTHO05D000818 7.2e-08 61.2 48 54.2
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 7.2e-08 61.2 51 54.9
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 7.2e-08 61.2 51 54.9
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 7.2e-08 61.2 48 56.2
MD07G1267400 Malus domestica HOM05D002077 ORTHO05D000818 7.2e-08 61.2 52 55.8
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 7.2e-08 61.2 51 54.9
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 9.3e-08 60.8 47 53.2
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 9.3e-08 60.8 48 54.2
FAN03G0915 Fragaria x ananassa HOM05D002077 ORTHO05D000818 9.3e-08 60.8 48 54.2
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 9.3e-08 60.8 48 54.2
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 9.3e-08 60.8 48 54.2
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 9.3e-08 60.8 66 47.0
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 9.3e-08 60.8 47 53.2
TPR.G14336 Trifolium pratense HOM05D002077 ORTHO05D000818 9.3e-08 60.8 48 56.2
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 9.3e-08 60.8 48 58.3
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 1.2e-07 60.5 66 47.0
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 1.2e-07 60.5 48 56.2
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 1.2e-07 60.5 47 53.2
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 1.6e-07 60.1 50 50.0
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 1.6e-07 60.1 48 54.2
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.6e-07 60.1 48 54.2
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 1.6e-07 60.1 48 56.2
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 1.6e-07 60.1 51 52.9
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 1.6e-07 60.1 48 54.2
BcaB01g00773 Brassica carinata HOM05D002077 ORTHO05D000818 2.1e-07 59.7 55 43.6
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 2.1e-07 59.7 48 52.1
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 2.1e-07 59.7 51 54.9
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 2.1e-07 59.7 49 57.1
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 2.1e-07 59.7 51 54.9
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 2.1e-07 59.7 66 45.5
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 2.7e-07 59.3 44 54.5
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 2.7e-07 59.3 48 56.2
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 2.7e-07 59.3 44 59.1
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.7e-07 59.3 48 52.1
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 2.7e-07 59.3 51 52.9
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 2.7e-07 59.3 66 45.5
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 2.7e-07 59.3 48 56.2
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 2.7e-07 59.3 51 52.9
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 3.6e-07 58.9 51 52.9
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 3.6e-07 58.9 51 52.9
RcHm_v2.0_Chr1g0377071 Rosa chinensis HOM05D002077 ORTHO05D000818 3.6e-07 58.9 48 52.1
PGSC0003DMG402014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.6e-07 58.5 48 54.2
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 6.1e-07 58.2 44 52.3
Medtr1g100713 Medicago truncatula HOM05D002077 ORTHO05D000818 6.1e-07 58.2 48 50.0
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 7.9e-07 57.8 48 52.1
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 7.9e-07 57.8 43 58.1
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 7.9e-07 57.8 51 51.0
Sabra12G0103300 Salix brachista HOM05D002077 ORTHO05D000818 7.9e-07 57.8 46 50.0
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 1.0e-06 57.4 44 52.3
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 1.0e-06 57.4 48 54.2
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 1.3e-06 57.0 48 52.1
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 1.3e-06 57.0 48 52.1
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 1.8e-06 56.6 48 50.0
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 1.8e-06 56.6 48 52.1
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 1.8e-06 56.6 71 43.7
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 2.3e-06 56.2 47 48.9
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 2.3e-06 56.2 47 48.9
BolC8t50011H Brassica oleracea HOM05D002077 ORTHO05D000818 2.3e-06 56.2 47 48.9
CAN.G1154.4 Capsicum annuum HOM05D002077 ORTHO05D000818 2.3e-06 56.2 66 43.9
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 2.3e-06 56.2 45 51.1
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 3.0e-06 55.8 49 46.9
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 3.0e-06 55.8 47 46.8
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 3.0e-06 55.8 51 51.0
FAN03G1381 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.0e-06 55.8 49 53.1
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 3.9e-06 55.5 67 44.8
FAN10G2215 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.9e-06 55.5 49 53.1
HanXRQChr15g0495581 Helianthus annuus HOM05D002077 ORTHO05D000818 3.9e-06 55.5 48 47.9
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 3.9e-06 55.5 48 47.9
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 3.9e-06 55.5 64 45.3
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.9e-06 55.5 48 52.1
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 5.1e-06 55.1 48 47.9
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 5.1e-06 55.1 56 46.4
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 5.1e-06 55.1 48 47.9
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 6.7e-06 54.7 48 54.2
FvH4_7g29321 Fragaria vesca HOM05D002077 ORTHO05D000818 6.7e-06 54.7 48 52.1
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 6.7e-06 54.7 66 45.5
MD09G1056800 Malus domestica HOM05D002077 ORTHO05D000818 8.7e-06 54.3 50 50.0


User provided reference genes

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