Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.3e-261 903.3 494 100.0
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.7e-200 703.0 415 96.1
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.8e-199 699.5 415 95.9
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-167 594.0 344 92.7
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.8e-162 576.6 414 84.1
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.2e-160 569.7 415 83.9
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 2.3e-149 533.1 349 86.0
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 5.0e-149 531.9 348 85.3
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.1e-139 500.0 286 99.0
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 9.9e-137 491.1 342 81.0
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 2.2e-128 463.4 340 77.6
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 1.6e-123 447.2 377 75.6
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 5.3e-122 442.2 364 70.1
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 9.9e-121 438.0 348 72.7
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 1.7e-120 437.2 334 74.9
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 4.9e-120 435.6 343 73.2
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 8.4e-120 434.9 343 73.5
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 1.4e-119 434.1 339 71.4
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 1.4e-119 434.1 348 71.6
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 3.2e-119 433.0 339 72.9
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 7.1e-119 431.8 343 72.9
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 1.6e-118 430.6 338 72.8
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 6.0e-118 428.7 334 73.4
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 6.0e-118 428.7 323 73.7
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 1.3e-117 427.6 355 70.1
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 1.3e-117 427.6 332 73.2
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 3.9e-117 426.0 272 83.8
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.7e-117 425.2 237 95.4
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 6.7e-117 425.2 385 66.2
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 8.7e-117 424.9 349 70.2
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 1.9e-116 423.7 337 72.7
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 3.3e-116 422.9 346 69.7
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 5.6e-116 422.2 397 72.0
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 5.6e-116 422.2 397 72.0
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 7.4e-116 421.8 346 70.2
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 4.8e-115 419.1 358 69.0
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 6.2e-115 418.7 350 70.9
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 6.2e-115 418.7 338 72.8
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 8.1e-115 418.3 339 69.0
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 8.1e-115 418.3 338 71.0
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 1.4e-114 417.5 346 69.4
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 1.8e-114 417.2 299 75.3
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 2.4e-114 416.8 299 77.3
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 2.4e-114 416.8 299 77.3
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 2.4e-114 416.8 346 69.4
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 2.4e-114 416.8 269 81.4
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 4.0e-114 416.0 292 76.0
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 4.0e-114 416.0 344 70.1
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 5.3e-114 415.6 346 70.5
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 6.9e-114 415.2 349 68.5
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.2e-113 414.5 381 70.3
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 2.0e-113 413.7 347 69.2
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 2.6e-113 413.3 341 69.5
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 3.4e-113 412.9 341 69.8
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 4.5e-113 412.5 354 68.6
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 7.6e-113 411.8 274 79.2
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 8.4e-112 408.3 342 68.1
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 1.1e-111 407.9 343 67.9
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 1.4e-111 407.5 325 69.2
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 2.4e-111 406.8 344 67.7
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 2.4e-111 406.8 391 67.8
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 3.2e-111 406.4 323 70.9
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 4.2e-111 406.0 330 69.7
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 4.2e-111 406.0 392 65.6
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 9.3e-111 404.8 379 70.4
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 9.3e-111 404.8 276 80.1
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 1.2e-110 404.4 344 67.4
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 4.6e-110 402.5 412 66.0
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 6.0e-110 402.1 339 68.1
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 7.9e-110 401.7 330 68.2
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 1.0e-109 401.4 338 67.5
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 1.0e-109 401.4 339 68.1
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.3e-109 401.0 231 99.1
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 3.0e-109 399.8 344 66.9
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 1.1e-108 397.9 336 67.6
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 2.1e-107 393.7 344 66.6
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 6.2e-107 392.1 300 71.7
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 6.2e-107 392.1 376 63.3
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 1.8e-106 390.6 345 64.9
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 5.3e-106 389.0 345 64.9
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 6.9e-106 388.7 343 66.8
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 2.0e-105 387.1 337 65.9
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 2.0e-105 387.1 348 64.1
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 2.0e-105 387.1 323 66.9
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 2.6e-105 386.7 385 60.5
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 5.8e-105 385.6 391 65.7
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 7.6e-105 385.2 346 65.0
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 1.3e-104 384.4 341 65.4
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.3e-104 384.4 377 66.8
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 1.7e-104 384.0 339 65.2
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 2.9e-104 383.3 396 63.1
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 1.4e-103 380.9 311 69.5
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 2.1e-102 377.1 427 56.0
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 6.7e-101 372.1 414 61.4
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 1.1e-100 371.3 290 69.0
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 1.6e-99 367.5 339 62.8
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 4.8e-99 365.9 333 63.1
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 5.3e-98 362.5 251 75.3
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 1.3e-96 357.8 321 65.1
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 1.7e-96 357.5 327 64.8
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 2.1e-94 350.5 255 71.8
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 2.9e-88 330.1 339 58.1
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 5.5e-87 325.9 274 60.9
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 1.2e-86 324.7 275 61.5
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 3.9e-85 319.7 278 61.9
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 7.0e-82 308.9 284 59.5
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 1.5e-81 307.8 303 59.7
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.0e-80 305.1 317 54.9
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.0e-80 305.1 317 54.9
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 7.2e-79 298.9 250 66.0
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 6.1e-78 295.8 338 55.0
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 8.2e-75 285.4 370 51.4
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 1.3e-72 278.1 326 49.4
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 5.0e-72 276.2 272 53.7
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 1.8e-69 267.7 338 47.6
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 7.2e-63 245.7 259 56.8
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 3.0e-61 240.4 261 57.1
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 3.0e-61 240.4 179 77.1
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.5e-60 238.0 341 50.7
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 2.9e-56 223.8 210 60.0
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.3e-51 206.1 117 94.9
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.9e-42 177.9 99 82.8
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.1e-34 152.1 84 91.7
FAN23G1103 Fragaria x ananassa HOM05D016072 ORTHO05D199226 1.1e-34 152.1 84 91.7
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 1.3e-27 128.6 93 66.7
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 2.2e-27 127.9 96 63.5
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 5.1e-16 90.1 59 67.8
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 8.7e-16 89.4 291 29.2
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 8.7e-16 89.4 281 27.8
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 4.4e-12 77.0 112 51.8
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 3.5e-09 67.4 125 36.8
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 6.6e-08 63.2 38 76.3
BcaC01g03672 Brassica carinata HOM05D029489 ORTHO05D091160 2.8e-06 57.8 34 76.5
BcaC04g20962 Brassica carinata HOM05D029489 ORTHO05D090624 2.8e-06 57.8 34 76.5


User provided reference genes

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