Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 9.3e-98 360.1 175 100.0
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.9e-85 317.4 161 96.9
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.5e-58 228.0 167 74.3
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 7.2e-58 227.6 167 74.9
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.2e-58 227.6 167 74.9
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.7e-57 225.7 167 73.7
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.1e-57 224.6 167 73.1
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.4e-56 223.4 167 73.1
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 4.0e-56 221.9 167 71.3
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.5e-55 219.9 167 71.9
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.9e-52 208.0 107 94.4
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 8.6e-43 177.6 164 58.5
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 1.9e-42 176.4 167 55.7
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 2.2e-38 162.9 167 53.9
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 4.9e-38 161.8 167 53.3
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 2.4e-37 159.5 166 53.0
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 9.2e-37 157.5 166 50.6
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 2.7e-36 156.0 167 52.7
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 3.9e-35 152.1 167 51.5
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 5.0e-35 151.8 167 49.7
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 6.6e-35 151.4 166 48.2
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 8.6e-35 151.0 167 52.7
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 1.1e-34 150.6 167 49.7
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.1e-34 150.6 166 50.0
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 2.5e-34 149.4 167 50.3
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 5.6e-34 148.3 167 51.5
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 2.8e-33 146.0 167 47.9
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 8.0e-33 144.4 166 48.8
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 1.4e-32 143.7 169 50.3
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.8e-32 143.3 166 45.8
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 5.2e-32 141.7 166 49.4
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 6.8e-32 141.4 166 48.2
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 6.8e-32 141.4 168 48.2
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 8.9e-32 141.0 168 48.2
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 2.0e-31 139.8 163 48.5
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 2.6e-31 139.4 166 47.6
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 2.6e-31 139.4 167 47.3
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 3.4e-31 139.0 170 48.2
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.4e-31 139.0 168 47.0
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 7.5e-31 137.9 167 46.7
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 7.5e-31 137.9 163 47.2
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 9.8e-31 137.5 166 45.8
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.7e-30 136.7 169 46.7
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 1.7e-30 136.7 168 47.0
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 2.2e-30 136.3 168 47.6
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 2.9e-30 136.0 150 50.7
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 6.4e-30 134.8 167 44.3
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.9e-29 133.3 150 52.0
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 1.9e-29 133.3 166 45.8
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 3.2e-29 132.5 168 45.2
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 4.1e-29 132.1 167 41.9
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 1.2e-28 130.6 167 41.9
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.6e-28 130.2 149 49.7
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 2.0e-28 129.8 166 43.4
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 2.7e-28 129.4 168 45.8
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 4.6e-28 128.6 149 49.7
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 7.8e-28 127.9 167 43.1
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 1.0e-27 127.5 149 49.0
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 1.3e-27 127.1 149 49.0
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 1.7e-27 126.7 166 41.6
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 3.0e-27 125.9 169 43.2
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 3.0e-27 125.9 168 42.9
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 3.9e-27 125.6 167 43.1
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 3.9e-27 125.6 167 41.3
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 8.6e-27 124.4 168 43.5
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 8.6e-27 124.4 168 44.0
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 1.1e-26 124.0 167 41.9
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 1.5e-26 123.6 167 41.3
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 2.5e-26 122.9 150 43.3
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.2e-25 120.6 136 50.7
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 1.2e-25 120.6 167 38.9
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.6e-25 120.2 178 41.0
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 2.8e-25 119.4 150 45.3
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 2.8e-25 119.4 167 41.9
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 3.6e-25 119.0 151 43.0
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 3.6e-25 119.0 151 43.7
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 3.6e-25 119.0 167 40.1
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 4.7e-25 118.6 152 44.7
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 4.7e-25 118.6 167 40.1
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 6.2e-25 118.2 151 43.7
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 6.2e-25 118.2 167 41.9
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 8.1e-25 117.9 167 39.5
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 1.1e-24 117.5 181 39.2
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 1.4e-24 117.1 181 39.8
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 1.8e-24 116.7 167 40.1
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 5.2e-24 115.2 160 40.0
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 8.9e-24 114.4 167 38.3
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 8.9e-24 114.4 151 41.1
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 8.9e-24 114.4 151 39.7
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 8.9e-24 114.4 167 38.9
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 8.9e-24 114.4 135 48.9
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 2.0e-23 113.2 151 41.7
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 2.0e-23 113.2 151 41.7
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 2.0e-23 113.2 151 41.7
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 5.8e-23 111.7 151 39.7
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 5.8e-23 111.7 151 39.7
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 3.7e-22 109.0 151 41.1
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 3.7e-22 109.0 151 41.1
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 1.9e-21 106.7 67 80.6
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 5.1e-19 98.6 149 37.6
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 5.6e-18 95.1 110 47.3
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 9.5e-18 94.4 91 52.7
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 9.5e-18 94.4 91 52.7
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 3.6e-17 92.4 123 41.5
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 3.1e-16 89.4 166 34.3
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 5.2e-16 88.6 93 50.5
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 2.2e-14 83.2 282 25.2
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.1e-13 80.9 91 48.4
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 1.9e-13 80.1 152 33.6
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 3.2e-13 79.3 151 35.1
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 9.2e-13 77.8 94 42.6
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 2.5e-10 69.7 58 58.6
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 3.3e-10 69.3 145 35.2
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.8e-08 63.5 143 34.3
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 4.0e-08 62.4 57 56.1
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 3.8e-06 55.8 45 57.8
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 6.4e-06 55.1 146 27.4


User provided reference genes

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