Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3682.9 1918 100.0
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3531.1 1945 94.9
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3520.7 1947 94.3
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 3518.8 1908 96.0
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3471.0 1948 93.3
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3462.2 1913 94.4
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3429.0 1908 94.4
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 3123.2 1931 86.2
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2841.2 1924 78.8
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2821.6 1932 77.7
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2382.8 1969 66.4
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2373.2 1938 66.8
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2334.3 1950 65.2
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2309.3 1943 64.8
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2307.7 2084 62.1
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2295.8 1944 65.2
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2295.0 1951 64.3
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2290.8 1994 63.5
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2274.2 1971 64.4
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2263.8 1942 64.7
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2254.9 1950 63.4
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2252.2 1983 62.4
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2249.2 1948 63.2
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2248.4 1950 63.3
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2205.6 1972 61.5
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2182.5 1928 62.5
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2119.0 1943 60.3
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2111.6 1939 59.8
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2105.1 1921 60.3
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2096.6 1951 59.8
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2088.5 1994 58.8
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2084.7 1951 58.7
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2079.3 1531 68.6
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2069.7 1945 59.4
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2067.7 1809 61.8
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2067.4 1945 59.7
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2067.0 1962 58.7
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2066.6 1990 58.6
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2062.7 1948 59.3
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2056.6 1953 58.0
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2050.8 1989 57.8
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2046.9 1527 68.0
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 2046.6 1955 57.8
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2046.2 2001 58.3
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2042.3 1592 65.8
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 2041.9 1975 58.5
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2033.8 1994 57.9
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2032.7 1955 58.4
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 2030.0 1938 59.3
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 2022.3 1967 57.8
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1962.2 1951 56.5
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1962.2 2097 53.7
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1935.2 1967 56.1
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1922.9 2047 54.6
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1920.2 1957 56.1
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1906.3 1939 55.8
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1905.6 1951 55.9
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1903.6 1967 55.4
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1900.2 1945 55.9
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1899.4 1949 55.8
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1897.5 1814 58.3
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1894.4 1955 55.1
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1889.4 1818 58.0
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1883.6 1816 57.8
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1880.9 1916 56.4
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1880.9 1817 57.6
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1875.9 1932 56.2
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1867.4 2112 53.1
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1862.0 2026 52.5
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1855.5 1937 55.1
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1846.2 2014 52.6
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1844.3 1455 65.5
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1833.2 1698 60.1
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1827.0 2047 53.1
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1810.4 1981 53.9
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1798.1 1959 53.6
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1794.6 1846 54.6
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1791.5 1692 57.7
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1787.7 1319 68.8
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1776.1 1974 52.4
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1757.7 1948 52.5
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1721.1 1864 51.8
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1718.0 1870 52.5
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1715.3 1978 50.4
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1709.9 1992 50.8
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1707.6 1963 52.5
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1702.6 1925 51.1
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1687.5 1885 51.6
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1677.5 1787 54.3
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1677.5 1787 54.3
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1677.1 1939 52.0
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1667.1 1947 49.9
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1659.8 1948 50.4
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1635.9 1733 53.1
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1630.5 1963 49.6
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1620.5 1226 67.4
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1609.0 1946 49.0
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1603.2 1460 57.9
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1584.7 1237 68.9
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1563.1 1947 47.7
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1132.5 1669 41.1
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1101.7 1131 57.8
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 0.0e+00 1084.7 1890 37.8
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 1.1e-303 1047.7 952 59.1
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 6.4e-301 1038.5 1695 39.4
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 2.1e-296 1023.5 1936 36.4
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 2.0e-294 1016.9 1926 37.4
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 8.4e-293 1011.5 1825 38.5
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 1.1e-281 974.5 1168 51.8
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 1.0e-274 951.4 885 57.9
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 6.5e-269 932.2 1096 53.7
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 5.7e-257 892.5 996 54.4
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 5.4e-247 859.4 1084 49.1
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.4e-239 834.7 1041 47.4
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.7e-221 774.6 1468 34.6
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 6.0e-214 749.6 1930 29.8
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 4.5e-193 680.2 542 65.3
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 4.5e-185 653.7 552 61.4
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.1e-180 639.0 1169 36.9
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 1.5e-161 575.5 451 66.1
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 4.7e-150 537.3 833 43.6
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.0e-144 519.6 663 45.9
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.4e-138 499.2 551 48.5
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.2e-129 469.5 529 47.1
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 7.2e-127 460.3 734 47.1
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 8.9e-125 453.4 545 47.7
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 2.0e-100 372.5 277 68.6
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 8.4e-75 287.3 459 41.0
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 1.5e-71 276.6 379 44.6
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 5.3e-69 268.1 198 80.8
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 6.7e-64 251.1 382 41.1
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 2.8e-62 245.7 156 87.2
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.8e-56 226.5 141 88.7
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 8.7e-56 224.2 252 49.2
FAN27G1439 Fragaria x ananassa HOM05D011336 ORTHO05D017014 1.3e-54 220.3 330 52.1
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 7.7e-52 211.1 722 34.6
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 2.2e-51 209.5 527 33.4
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 8.2e-46 191.0 343 38.2
FAN07G2805 Fragaria x ananassa HOM05D011336 ORTHO05D022575 5.0e-43 181.8 294 49.7
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.6e-41 176.8 174 53.4
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 4.7e-41 175.3 140 61.4
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.8e-40 173.3 553 34.9
FAN09G4865 Fragaria x ananassa HOM05D011336 ORTHO05D017014 7.4e-39 167.9 245 53.9
FAN18G0882 Fragaria x ananassa HOM05D011336 ORTHO05D022575 1.6e-36 160.2 292 48.6
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.1e-34 154.1 185 41.1
FvH4_6g13732 Fragaria vesca HOM05D011336 ORTHO05D022575 3.2e-34 152.5 301 46.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.7e-33 148.7 109 69.7
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 3.0e-32 146.0 163 49.1
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 8.2e-30 137.9 162 48.1
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.4e-29 137.1 1198 21.0
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 4.1e-29 135.6 371 31.8
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 3.5e-28 132.5 96 72.9
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 5.9e-28 131.7 163 44.8
FAN11G2008 Fragaria x ananassa HOM05D011336 ORTHO05D022575 2.2e-27 129.8 275 46.9
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 2.2e-27 129.8 85 76.5
FAN11G2549 Fragaria x ananassa HOM05D011336 ORTHO05D017014 2.9e-27 129.4 96 74.0
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 8.5e-27 127.9 482 26.6
FAN20G2798 Fragaria x ananassa HOM05D011336 ORTHO05D004846 2.5e-26 126.3 355 39.2
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.2e-25 124.0 80 70.0
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.6e-25 123.6 224 40.6
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 3.6e-25 122.5 119 55.5
FvH4_3g34060 Fragaria vesca HOM05D011336 ORTHO05D017014 8.0e-25 121.3 96 78.1
FvH4_7g28240 Fragaria vesca HOM05D011336 ORTHO05D022575 1.8e-24 120.2 153 57.5
FAN20G1452 Fragaria x ananassa HOM05D011336 ORTHO05D017014 1.8e-24 120.2 290 39.7
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 6.8e-24 118.2 140 49.3
FAN25G1306 Fragaria x ananassa HOM05D011336 ORTHO05D017014 2.6e-23 116.3 125 61.6
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.7e-22 113.6 125 50.4
FvH4_6g21810 Fragaria vesca HOM05D011336 ORTHO05D022575 1.4e-21 110.5 128 61.7
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.6e-20 107.1 146 46.6
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 3.6e-17 95.9 186 37.6
FAN08G3289 Fragaria x ananassa HOM05D004392 ORTHO05D017014 2.6e-15 89.7 58 86.2
FvH4_3g16180 Fragaria vesca HOM05D011336 ORTHO05D004846 6.3e-14 85.1 111 58.6
FAN25G1164 Fragaria x ananassa HOM05D011336 ORTHO05D004846 1.1e-13 84.3 99 55.6
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 1.8e-13 83.6 103 50.5
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 4.1e-13 82.4 161 36.6
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 9.2e-13 81.3 55 63.6
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.3e-11 76.6 73 54.8
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 2.9e-11 76.3 70 54.3
Phvul.002G075100 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 5.0e-11 75.5 155 40.6
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 4.7e-09 68.9 57 61.4
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 6.1e-09 68.6 120 40.0
FAN07G0466 Fragaria x ananassa HOM05D004392 ORTHO05D017014 2.0e-07 63.5 50 76.0


User provided reference genes

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