Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.3e-95 350.5 173 100.0
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.2e-85 317.8 161 96.9
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.8e-59 231.9 170 75.3
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 4.9e-59 231.5 170 75.9
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.9e-59 231.5 170 75.9
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.9e-58 229.6 170 74.7
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.2e-58 228.4 170 74.1
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 9.3e-58 227.3 170 74.1
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 2.7e-57 225.7 170 72.4
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.0e-56 223.8 170 72.9
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 3.4e-44 182.2 167 59.9
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 3.8e-43 178.7 169 56.2
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.5e-42 176.0 92 92.4
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 9.7e-39 164.1 169 53.8
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 3.7e-38 162.2 167 54.5
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 4.1e-37 158.7 166 53.6
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 1.5e-36 156.8 166 51.2
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 3.4e-36 155.6 169 52.7
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 4.5e-36 155.2 169 50.9
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 1.3e-35 153.7 167 52.7
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 2.9e-35 152.5 168 48.8
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 5.0e-35 151.8 169 50.3
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 8.5e-35 151.0 168 51.2
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 1.9e-34 149.8 170 52.4
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 1.9e-34 149.8 167 50.3
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 2.5e-34 149.4 169 49.1
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 1.2e-33 147.1 170 51.2
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 4.7e-33 145.2 168 49.4
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 6.1e-33 144.8 166 46.4
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 2.3e-32 142.9 169 50.9
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 5.1e-32 141.7 169 47.9
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 6.7e-32 141.4 169 47.9
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 8.8e-32 141.0 166 50.0
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 8.8e-32 141.0 171 48.5
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 1.5e-31 140.2 168 48.8
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 1.5e-31 140.2 172 48.3
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 1.5e-31 140.2 166 48.2
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 4.4e-31 138.7 150 51.3
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 5.7e-31 138.3 169 46.7
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 5.7e-31 138.3 164 48.2
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 5.7e-31 138.3 169 47.3
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 7.4e-31 137.9 167 47.3
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.3e-30 137.1 171 46.8
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 1.3e-30 137.1 168 45.8
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 2.8e-30 136.0 169 46.7
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 3.7e-30 135.6 168 48.2
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 6.3e-30 134.8 151 51.0
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.8e-29 133.3 151 52.3
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 1.8e-29 133.3 153 51.0
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 2.4e-29 132.9 169 42.6
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 3.1e-29 132.5 167 44.3
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 3.1e-29 132.5 168 42.3
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 4.1e-29 132.1 153 50.3
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 5.3e-29 131.7 153 50.3
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 2.6e-28 129.4 152 49.3
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 3.5e-28 129.0 168 42.9
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 4.5e-28 128.6 168 46.4
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 4.5e-28 128.6 169 42.6
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 1.0e-27 127.5 174 43.7
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 1.3e-27 127.1 176 40.9
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 5.0e-27 125.2 152 46.7
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 6.5e-27 124.8 152 44.1
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 8.5e-27 124.4 168 42.9
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 8.5e-27 124.4 170 43.5
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 1.1e-26 124.0 168 41.7
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 1.9e-26 123.2 175 40.6
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 1.9e-26 123.2 177 41.8
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 2.5e-26 122.9 167 41.3
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 7.2e-26 121.3 167 43.1
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 9.4e-26 120.9 153 43.8
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 9.4e-26 120.9 153 44.4
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 9.4e-26 120.9 168 39.3
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 1.2e-25 120.6 154 45.5
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.6e-25 120.2 153 44.4
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.6e-25 120.2 137 51.1
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 2.1e-25 119.8 151 46.4
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.1e-25 119.8 186 40.3
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 3.6e-25 119.0 168 40.5
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 4.7e-25 118.6 171 41.5
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 6.1e-25 118.2 185 40.0
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 1.0e-24 117.5 184 39.1
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 1.0e-24 117.5 175 41.1
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 1.4e-24 117.1 167 40.1
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 2.3e-24 116.3 152 41.4
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 2.3e-24 116.3 153 41.8
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 2.3e-24 116.3 153 40.5
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 3.0e-24 115.9 167 39.5
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 4.0e-24 115.5 167 40.1
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 5.2e-24 115.2 153 42.5
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 5.2e-24 115.2 153 42.5
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 5.2e-24 115.2 153 42.5
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 5.2e-24 115.2 136 50.0
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 1.1e-23 114.0 161 40.4
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 1.5e-23 113.6 153 40.5
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 1.5e-23 113.6 153 40.5
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 3.3e-23 112.5 167 38.9
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 4.4e-23 112.1 71 84.5
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 9.7e-23 110.9 153 41.8
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 9.7e-23 110.9 153 41.8
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 6.5e-19 98.2 150 38.0
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 9.4e-18 94.4 91 52.7
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 9.4e-18 94.4 91 52.7
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.2e-17 94.0 116 44.8
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 8.0e-17 91.3 122 41.0
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 1.8e-16 90.1 166 35.5
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.2e-15 87.4 92 50.0
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 5.7e-15 85.1 288 25.3
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 8.3e-14 81.3 93 47.3
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 4.1e-13 79.0 152 35.5
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 2.7e-12 76.3 93 41.9
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 7.7e-12 74.7 153 32.7
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 3.8e-11 72.4 148 36.5
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.5e-10 70.5 62 58.1
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 5.2e-08 62.0 150 32.7
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.2e-07 60.8 58 55.2
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.7e-06 57.0 149 28.2


User provided reference genes

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