Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1980.3 1024 100.0
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1934.1 1024 98.0
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1933.3 1031 97.6
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1925.6 1028 96.6
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1874.8 1024 94.6
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1850.5 1028 92.9
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1655.6 1031 82.9
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1654.0 1024 82.5
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1591.6 974 83.2
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1564.7 1030 78.6
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1555.4 1027 77.6
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1546.9 1029 77.0
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1543.9 1041 76.9
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1537.7 1031 77.2
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1535.0 1023 77.8
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1529.6 1023 76.6
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1524.2 1031 75.8
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1524.2 1035 76.3
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1518.4 1038 76.1
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1512.3 1038 75.9
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1510.4 1023 75.0
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1503.0 1022 75.6
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1500.7 999 77.0
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1498.0 1035 75.3
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1497.3 1005 76.6
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1496.1 998 76.3
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1492.6 998 75.9
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1491.1 1035 75.7
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1484.2 1019 75.0
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1479.2 1012 75.8
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1476.1 1005 75.2
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1475.7 1039 73.9
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1474.9 1056 72.8
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1473.0 1033 74.2
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1472.6 1036 74.4
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1472.2 1079 72.5
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1467.6 1029 74.3
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1467.6 1032 73.8
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1467.2 1005 75.0
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1464.1 1038 73.5
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1462.2 1042 73.3
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1461.8 1057 72.8
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1459.5 1004 75.2
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1452.2 1036 73.3
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1450.3 1032 72.7
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1448.0 1013 74.8
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1444.5 1070 71.9
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1444.1 1017 74.4
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1442.6 1029 72.5
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1442.2 1015 74.4
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1440.6 1032 73.8
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1437.9 1032 73.7
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1435.2 1048 72.4
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1434.5 1031 73.1
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1432.9 1009 73.7
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1430.2 985 74.4
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1428.7 1038 72.6
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1424.1 1004 75.1
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1423.3 1025 73.5
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1418.3 1005 72.8
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1414.8 1006 72.8
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1414.1 1035 71.7
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1414.1 1035 71.7
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1412.5 1035 72.0
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1407.5 1005 72.6
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1406.3 1033 72.7
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1403.7 1005 72.4
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1395.2 1036 70.8
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1392.1 1003 72.2
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1389.0 993 72.7
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1385.2 1005 71.5
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1384.8 1007 72.2
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1384.8 1035 69.5
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1384.4 1002 71.8
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1380.5 1031 69.9
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1377.5 912 76.4
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1376.7 1015 71.3
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1375.1 1016 70.8
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1372.1 1016 70.6
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1370.1 994 71.3
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1369.4 1060 69.9
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1368.6 1071 67.5
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1364.0 1027 68.9
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1363.6 1018 70.9
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1360.9 1003 71.7
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1352.8 1005 70.5
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1350.1 1013 70.5
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1343.2 1000 70.4
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1006 70.8
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1339.7 1010 70.2
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1338.2 1031 67.9
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1338.2 887 78.0
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1337.0 1006 70.5
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1335.1 1007 68.7
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1334.7 1005 70.2
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1333.9 1038 67.1
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1332.4 1005 69.8
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1326.2 1006 69.9
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1325.5 1015 69.5
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1325.5 1015 69.5
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1325.1 1015 69.4
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1322.0 1012 68.8
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1321.2 886 77.9
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 982 70.0
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1304.7 913 75.5
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1301.2 1005 68.3
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1030 66.6
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1300.0 1005 68.2
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1291.2 1007 68.0
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1290.0 985 68.9
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1288.9 1038 65.6
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1285.8 1003 67.6
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1285.0 1004 67.9
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1281.9 1012 67.8
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1275.8 1013 67.2
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1275.0 992 67.4
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1272.3 1022 66.3
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1204.1 1010 63.2
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1201.4 994 64.9
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1188.3 1019 64.1
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1181.8 928 67.6
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1171.8 1027 62.4
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1171.0 1018 63.7
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1169.5 1035 61.7
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1135.2 844 69.2
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1130.9 981 62.5
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1130.2 1004 60.2
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1107.8 1056 59.2
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.7e-298 1028.9 988 58.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 5.7e-296 1021.1 906 59.6
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.0e-293 1012.7 1041 57.3
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 9.7e-280 967.2 801 67.0
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.2e-274 950.3 827 61.7
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 3.4e-264 915.6 980 52.9
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.7e-263 913.3 714 69.5
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.9e-259 899.8 736 68.6
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 6.2e-250 868.2 1003 50.0
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 7.8e-245 851.3 979 49.8
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.9e-238 830.1 978 48.2
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.2e-237 827.4 977 49.5
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 3.3e-227 792.7 836 52.4
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.3e-220 770.8 811 53.3
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.8e-208 728.8 715 61.7
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 8.7e-196 688.3 655 57.4
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 7.4e-195 685.3 902 44.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 4.2e-182 642.9 831 49.9
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 8.8e-172 608.6 957 39.6
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.1e-171 608.2 630 55.2
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.9e-159 567.0 622 53.5
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.2e-157 561.6 666 52.3
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 5.7e-147 526.2 1156 33.7
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.7e-146 524.6 636 49.1
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 6.0e-128 463.0 415 58.1
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 3.2e-121 440.7 637 45.4
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.5e-118 431.8 548 47.8
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 8.1e-109 399.4 276 77.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.1e-96 358.2 236 80.1
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 9.0e-84 316.2 317 55.8
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 2.2e-82 311.6 268 64.9
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 4.8e-69 267.3 1034 28.5
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 5.0e-66 257.3 253 59.7
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.7e-56 224.9 219 53.4
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 4.5e-51 207.6 702 27.2
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 5.9e-51 207.2 909 23.9
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 7.2e-49 200.3 158 62.7
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.0e-47 196.4 176 55.1
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 3.0e-47 194.9 156 62.8
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.9e-41 175.6 215 42.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.7e-37 161.4 127 59.8
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.4e-36 159.5 186 51.1
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.3e-26 125.6 130 50.0
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.3e-21 109.8 88 58.0
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.3e-21 109.8 88 58.0
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.7e-21 108.2 114 49.1
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 8.9e-15 87.0 85 61.2
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 4.9e-13 81.3 60 71.7
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.6e-11 76.3 66 56.1


User provided reference genes

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