Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1231.9 625 100.0
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1208.7 625 97.6
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 1181.8 625 95.7
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1180.2 625 95.8
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1171.0 625 95.2
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1114.4 620 90.6
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 3.6e-277 958.0 626 76.7
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 2.7e-272 941.8 625 76.6
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 2.5e-238 828.9 624 69.4
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 1.0e-231 807.0 625 68.0
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 5.6e-230 801.2 635 65.2
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 4.8e-229 798.1 625 67.5
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 6.2e-229 797.7 637 66.9
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 2.4e-228 795.8 625 66.6
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 7.4e-222 774.2 622 64.6
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 2.2e-221 772.7 623 63.2
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 9.0e-220 767.3 627 63.6
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 1.2e-219 766.9 624 63.3
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 1.9e-217 759.6 623 63.4
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 4.6e-216 755.0 621 63.8
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.0e-215 753.8 625 63.0
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 1.0e-215 753.8 621 63.4
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 7.4e-214 747.7 625 62.4
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 1.7e-213 746.5 674 59.3
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 1.5e-211 740.0 625 61.8
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 1.0e-210 737.3 729 55.7
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 5.0e-210 734.9 625 61.0
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 5.0e-210 734.9 689 57.3
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 8.5e-210 734.2 628 61.5
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 1.8e-207 726.5 625 60.5
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 3.0e-207 725.7 624 60.4
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 4.4e-206 721.8 625 60.2
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 9.7e-206 720.7 625 60.3
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 2.2e-205 719.5 626 60.4
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 8.2e-205 717.6 626 59.9
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 1.8e-204 716.5 626 59.4
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 3.1e-204 715.7 648 58.2
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 3.1e-204 715.7 625 59.8
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 2.0e-203 713.0 626 59.1
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 8.5e-202 707.6 624 61.2
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 2.7e-200 702.6 625 58.1
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 5.2e-199 698.4 676 56.5
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 5.7e-198 694.9 639 57.7
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 6.3e-197 691.4 626 58.8
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 7.0e-196 688.0 627 57.4
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 5.9e-195 684.9 628 57.6
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 4.8e-189 665.2 631 56.3
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 1.1e-188 664.1 625 56.2
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 1.4e-188 663.7 628 57.2
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 7.0e-188 661.4 652 55.7
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 1.3e-186 657.1 625 56.0
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 3.8e-186 655.6 629 55.5
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 8.5e-186 654.4 627 55.3
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 7.2e-185 651.4 624 55.8
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 8.0e-184 647.9 624 55.6
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 4.0e-183 645.6 622 55.6
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 4.1e-180 635.6 626 55.3
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 1.2e-179 634.0 624 56.6
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 5.9e-179 631.7 625 53.4
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 5.5e-177 625.2 625 55.2
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 4.0e-175 619.0 691 50.8
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 8.3e-173 611.3 624 54.3
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 5.9e-171 605.1 626 53.7
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 2.9e-170 602.8 625 53.8
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 9.5e-169 597.8 619 53.3
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 2.8e-168 596.3 643 51.9
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 2.3e-167 593.2 630 53.0
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 9.8e-166 587.8 629 52.9
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 9.8e-166 587.8 629 52.9
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 2.9e-165 586.3 625 53.4
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 3.5e-163 579.3 625 53.3
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 6.0e-163 578.6 628 53.0
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 7.8e-163 578.2 630 52.5
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 1.0e-162 577.8 627 53.3
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 1.7e-162 577.0 625 52.6
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 7.3e-161 571.6 642 51.7
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 5.2e-159 565.5 529 55.6
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 1.2e-158 564.3 629 51.0
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 3.7e-157 559.3 627 49.9
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 3.7e-157 559.3 624 51.3
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 6.0e-155 552.0 624 51.1
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 1.2e-152 544.3 648 49.5
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 3.1e-151 539.7 648 49.2
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 8.9e-151 538.1 627 46.7
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 8.9e-151 538.1 634 50.6
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 3.7e-149 532.7 624 49.8
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 1.2e-147 527.7 524 54.8
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 2.4e-143 513.5 677 45.8
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 2.7e-131 473.4 382 63.4
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.4e-124 450.3 543 47.7
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 5.8e-118 429.1 523 47.4
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 7.6e-118 428.7 625 42.9
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 2.4e-111 407.1 428 52.6
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 2.5e-105 387.1 320 61.6
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 1.2e-99 368.2 358 56.1
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 4.8e-96 356.3 405 51.1
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.9e-92 344.4 320 57.8
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 2.7e-83 313.9 383 47.5
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 8.8e-82 308.9 262 62.6
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 1.1e-76 292.0 662 30.7
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 4.8e-72 276.6 664 29.5
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 1.7e-69 268.1 244 59.8
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 8.8e-66 255.8 636 30.0
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 1.5e-65 255.0 666 29.7
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 7.5e-65 252.7 475 34.3
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 2.4e-63 247.7 189 65.1
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 6.6e-45 186.4 229 45.4
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 3.3e-44 184.1 503 30.0
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 9.5e-44 182.6 244 43.0
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 5.2e-42 176.8 301 38.5
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 7.8e-38 162.9 122 68.0
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 3.0e-37 161.0 162 52.5
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 4.4e-33 147.1 164 48.8
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.2e-32 144.8 154 50.6
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 5.4e-31 140.2 120 57.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 7.1e-31 139.8 168 47.6
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 1.6e-30 138.7 160 50.0
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 4.3e-28 130.6 167 45.5
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 4.9e-24 117.1 94 63.8
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 7.1e-23 113.2 214 36.9
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 2.1e-22 111.7 604 22.4
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 1.5e-20 105.5 73 71.2
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 7.3e-20 103.2 75 65.3
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 7.3e-20 103.2 86 58.1
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.1e-18 99.4 76 59.2
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 1.4e-18 99.0 210 34.8
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 3.1e-18 97.8 77 62.3
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 7.6e-17 93.2 157 42.0
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 4.2e-15 87.4 131 42.7
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 2.6e-09 68.2 71 49.3
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 3.4e-09 67.8 138 32.6
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 5.8e-09 67.0 61 57.4
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 6.0e-06 57.0 78 35.9
MBI08_g18763_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D010488 7.9e-06 56.6 42 66.7


User provided reference genes

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