Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1480 Fragaria x ananassa HOM05D013306 ORTHO05D035584 7.0e-170 600.9 388 100.0
FAN06G0659 Fragaria x ananassa HOM05D001876 ORTHO05D035584 5.4e-114 415.2 352 76.1
FvH4_7g10090 Fragaria vesca HOM05D013306 ORTHO05D035584 6.0e-89 332.0 185 95.7
FvH4_5g06810 Fragaria vesca HOM05D013306 ORTHO05D046474 1.1e-66 258.1 243 73.3
FAN08G2706 Fragaria x ananassa HOM05D013306 ORTHO05D046474 1.3e-59 234.6 178 77.0
FAN11G3885 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.2e-38 164.1 482 32.4
FAN25G1930 Fragaria x ananassa HOM05D001876 ORTHO05D002002 8.3e-38 162.2 481 32.0
FvH4_3g41980 Fragaria vesca HOM05D001876 ORTHO05D002002 2.7e-36 157.1 482 31.7
FAN21G2243 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.0e-35 155.2 480 31.7
FAN16G1749 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.2e-35 154.1 482 31.7
RcHm_v2.0_Chr5g0075171 Rosa chinensis HOM05D001876 ORTHO05D002002 3.4e-31 140.2 480 30.8
FAN11G3414 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.1e-25 120.9 164 52.4
FvH4_3g42880 Fragaria vesca HOM05D001876 ORTHO05D002002 6.1e-25 119.4 164 51.8
FvH4_4g01880 Fragaria vesca HOM05D001876 ORTHO05D002002 1.7e-22 111.3 166 47.6
FvH4_7g20220 Fragaria vesca HOM05D001876 ORTHO05D002002 1.7e-22 111.3 196 43.9
FAN12G4233 Fragaria x ananassa HOM05D001876 ORTHO05D045887 3.2e-21 107.1 121 54.5
FAN21G1841 Fragaria x ananassa HOM05D001876 ORTHO05D002002 3.2e-21 107.1 167 43.7
MD11G1041300 Malus domestica HOM05D001876 ORTHO05D002002 6.6e-19 99.4 480 27.1
MD03G1039800 Malus domestica HOM05D001876 ORTHO05D002002 8.6e-19 99.0 179 40.8
FAN25G3337 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.6e-17 94.7 110 52.7
Cfa016942 Carpinus fangiana HOM05D001876 ORTHO05D002002 3.6e-17 93.6 473 25.8
FAN01G0741 Fragaria x ananassa HOM05D001876 ORTHO05D019192 8.9e-16 89.0 302 33.1
Haze_09897 Corylus avellana HOM05D001876 ORTHO05D002002 1.5e-15 88.2 474 25.1
Prupe.6G032100 Prunus persica HOM05D001876 ORTHO05D002002 4.4e-15 86.7 478 25.3
FvH4_3g42840 Fragaria vesca HOM05D001876 ORTHO05D002002 2.9e-14 84.0 108 52.8
Dinv04380 Davidia involucrata HOM05D001876 ORTHO05D002002 6.4e-14 82.8 375 27.7
RcHm_v2.0_Chr4g0407801 Rosa chinensis HOM05D000005 ORTHO05D000012 6.4e-14 82.8 125 45.6
FAN06G0414 Fragaria x ananassa HOM05D001876 ORTHO05D019192 6.0e-12 76.3 268 31.3
Manes.05G206100 Manihot esculenta HOM05D001876 ORTHO05D002002 1.3e-11 75.1 111 39.6
FvH4_7g10420 Fragaria vesca HOM05D001876 ORTHO05D019192 2.3e-11 74.3 253 31.2
CiPaw.12G141800 Carya illinoinensis HOM05D001876 ORTHO05D002002 3.9e-11 73.6 178 32.6
FAN06G3562 Fragaria x ananassa HOM05D001876 ORTHO05D019192 3.9e-11 73.6 320 29.4
Nitab4.5_0000152g0190 Nicotiana tabacum HOM05D001876 ORTHO05D002002 8.6e-11 72.4 480 24.0
Hma1.2p1_0193F.1_g084140 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 1.9e-10 71.2 483 25.3
Hma1.2p1_2995F.1_g331450 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 1.9e-10 71.2 483 25.3
Nitab4.5_0001303g0100 Nicotiana tabacum HOM05D001876 ORTHO05D002002 1.9e-10 71.2 480 24.0
Manes.01G005000 Manihot esculenta HOM05D001876 ORTHO05D002002 2.5e-10 70.9 161 34.2
MBI15_g41024_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 5.6e-10 69.7 119 40.3
Peaxi162Scf00232g00036 Petunia axillaris HOM05D001876 ORTHO05D002002 5.6e-10 69.7 114 41.2
Sopen07g034150 Solanum pennellii HOM05D001876 ORTHO05D002002 7.3e-10 69.3 114 40.4
Dinv06828 Davidia involucrata HOM05D001876 ORTHO05D002002 1.2e-09 68.6 114 41.2
TAR626G0018 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.6e-09 68.2 114 41.2
GSVIVG01014783001 Vitis vinifera HOM05D001876 ORTHO05D002002 2.1e-09 67.8 114 40.4
TAR629G2148 Trochodendron aralioides HOM05D001876 ORTHO05D002002 4.7e-09 66.6 114 40.4
CDE10G0783 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 8.1e-09 65.9 117 38.5
Thecc.07G005200 Theobroma cacao HOM05D001876 ORTHO05D002002 8.1e-09 65.9 174 32.2
DCAR_017598 Daucus carota HOM05D001876 ORTHO05D002002 1.1e-08 65.5 114 38.6
Migut.H01726 Erythranthe guttata HOM05D001876 ORTHO05D002002 1.1e-08 65.5 185 30.8
Dinv40896 Davidia involucrata HOM05D001876 ORTHO05D002002 1.4e-08 65.1 185 31.9
Peaxi162Scf00006g00717 Petunia axillaris HOM05D001876 ORTHO05D002002 1.8e-08 64.7 114 39.5
CDE10G0998 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 2.3e-08 64.3 117 38.5
FvH4_3g42790 Fragaria vesca HOM05D001876 ORTHO05D002002 4.0e-08 63.5 50 80.0
FAN21G3992 Fragaria x ananassa HOM05D001876 ORTHO05D002002 4.0e-08 63.5 98 52.0
Rhsim06G0234000 Rhododendron simsii HOM05D001876 ORTHO05D002002 5.2e-08 63.2 480 22.3
RcHm_v2.0_Chr4g0386801 Rosa chinensis HOM05D001876 ORTHO05D002002 5.2e-08 63.2 134 36.6
RcHm_v2.0_Chr4g0389341 Rosa chinensis HOM05D001876 ORTHO05D002002 5.2e-08 63.2 109 42.2
Nn1g07691 Nelumbo nucifera HOM05D001876 ORTHO05D002002 6.8e-08 62.8 114 39.5
Duzib213G0425 Durio zibethinus HOM05D001876 ORTHO05D002002 8.9e-08 62.4 482 23.7
Actinidia30365 Actinidia chinensis HOM05D001876 ORTHO05D002002 1.2e-07 62.0 166 31.3
CSS0030826 Camellia sinensis var. sinensis HOM05D001876 ORTHO05D002002 1.2e-07 62.0 161 29.2
Phvul.006G060500 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 1.2e-07 62.0 103 38.8
Potri.011G166400 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.2e-07 62.0 114 38.6
FAN10G0434 Fragaria x ananassa HOM05D030657 ORTHO05D019192 1.5e-07 61.6 62 59.7
HanXRQChr03g0077781 Helianthus annuus HOM05D001876 ORTHO05D002002 1.5e-07 61.6 118 38.1
RcHm_v2.0_Chr4g0386931 Rosa chinensis HOM05D001876 ORTHO05D002002 1.5e-07 61.6 116 41.4
Gohir.D08G036200 Gossypium hirsutum HOM05D001876 ORTHO05D002002 2.0e-07 61.2 164 29.3
QL08p001531 Quercus lobata HOM05D001876 ORTHO05D002002 2.0e-07 61.2 481 23.7
Cc05_g15500 Coffea canephora HOM05D001876 ORTHO05D002002 2.6e-07 60.8 181 31.5
Sabra16G0318400 Salix brachista HOM05D001876 ORTHO05D002002 2.6e-07 60.8 114 37.7
Eucgr.E04228 Eucalyptus grandis HOM05D001876 ORTHO05D002002 3.4e-07 60.5 82 42.7
Gorai.004G034200 Gossypium raimondii HOM05D001876 ORTHO05D002002 3.4e-07 60.5 164 29.3
Actinidia03661 Actinidia chinensis HOM05D001876 ORTHO05D002002 4.4e-07 60.1 180 28.3
Duzib170G0551 Durio zibethinus HOM05D001876 ORTHO05D002002 4.4e-07 60.1 484 22.9
Potri.016G002100 Populus trichocarpa HOM05D001876 ORTHO05D002002 4.4e-07 60.1 114 36.8
RcHm_v2.0_Chr4g0389201 Rosa chinensis HOM05D001876 ORTHO05D002002 4.4e-07 60.1 52 61.5
THA.LOC104810297 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 5.8e-07 59.7 118 36.4
Atru.chr2.3845 Acer truncatum HOM05D001876 ORTHO05D002002 7.5e-07 59.3 485 23.3
ClCG10G004140 Citrullus lanatus HOM05D001876 ORTHO05D002002 7.5e-07 59.3 112 33.9
FAN10G1274 Fragaria x ananassa HOM05D030657 ORTHO05D019192 7.5e-07 59.3 273 28.6
vmacro11629 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 7.5e-07 59.3 173 32.4
Lj1A897T44 Lonicera japonica HOM05D001876 ORTHO05D002002 9.8e-07 58.9 175 30.3
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 9.8e-07 58.9 114 36.0
Ciclev10007261m.g Citrus clementina HOM05D001876 ORTHO05D002002 1.3e-06 58.5 177 33.9
Gohir.A08G025700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 1.3e-06 58.5 164 28.7
MBI15_g35676_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.7e-06 58.2 120 37.5
CANSAT11G0621 Cannabis sativa HOM05D001876 ORTHO05D002002 2.2e-06 57.8 84 39.3
DCAR_013771 Daucus carota HOM05D001876 ORTHO05D002002 2.2e-06 57.8 489 25.6
Duzib268G1004 Durio zibethinus HOM05D001876 ORTHO05D002002 2.2e-06 57.8 186 30.6
HanXRQChr11g0334581 Helianthus annuus HOM05D001876 ORTHO05D002002 2.2e-06 57.8 114 36.0
THA.LOC104822709 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 2.2e-06 57.8 118 38.1
Psat5g163240 Pisum sativum HOM05D001876 ORTHO05D002002 2.9e-06 57.4 160 32.5
arahy.Tifrunner.gnm1.ann1.ADA7T8 Arachis hypogaea HOM05D001876 ORTHO05D002002 3.7e-06 57.0 118 33.9
arahy.Tifrunner.gnm1.ann1.LQ166S Arachis hypogaea HOM05D001876 ORTHO05D002002 3.7e-06 57.0 118 33.9
Aa31LG10G500 Aethionema arabicum HOM05D001876 ORTHO05D002002 8.3e-06 55.8 114 36.0
arahy.Tifrunner.gnm1.ann1.SQBY3A Arachis hypogaea HOM05D001876 ORTHO05D002002 8.3e-06 55.8 118 33.1
THA.LOC104815682 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 8.3e-06 55.8 84 41.7


User provided reference genes

Program Settings