Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2388.6 1188 100.0
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2339.7 1230 95.4
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2316.6 1214 95.6
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2307.3 1220 94.8
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2274.6 1267 90.8
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2256.5 1214 93.1
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2028.4 1210 83.9
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2008.4 1217 82.4
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 1912.5 1210 78.7
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 1856.3 1320 71.7
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 1855.1 1209 76.9
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 1847.4 1212 76.2
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 1847.4 1211 75.9
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 1846.2 1235 75.5
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 1829.3 1210 74.5
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1826.6 1209 74.9
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1823.9 1212 74.1
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 1820.8 1212 74.1
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1819.3 1212 73.9
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 1819.3 1212 73.9
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 1817.7 1215 74.5
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 1814.3 1209 74.2
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 1805.4 1177 76.4
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 1785.8 1212 73.1
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 1784.2 1211 73.5
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 1779.2 1296 70.1
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 1776.9 1207 73.4
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 1775.8 1211 73.2
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 1773.4 1209 72.0
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 1772.7 1211 72.8
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 1770.7 1206 72.9
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 1770.0 1209 72.3
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 1767.7 1216 72.0
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 1766.1 1213 72.4
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 1761.5 1209 71.5
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 1760.3 1206 72.0
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 1759.2 1206 72.0
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 1758.0 1212 72.4
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 1754.2 1206 71.5
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 1753.0 1230 71.1
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 1737.6 1280 69.6
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 1726.1 1211 70.4
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 1725.7 1209 70.8
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 1723.0 1211 70.4
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 1713.0 1211 70.2
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 1712.6 1265 68.9
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 1708.7 1082 77.9
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 1707.2 1257 69.9
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 1701.4 1215 68.3
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 1684.1 1215 68.7
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 1683.7 1199 70.1
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 1672.9 1211 69.1
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1672.1 1246 67.7
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 1671.8 1204 69.6
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1667.1 1211 67.9
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1661.4 1209 70.2
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 1661.0 1220 68.7
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1660.2 1209 67.5
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1650.6 1207 66.9
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1650.2 1208 67.4
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 1646.3 1212 66.4
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 1642.1 1212 66.7
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 1637.1 1211 67.2
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1630.9 1228 66.0
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 1629.4 1212 67.2
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 1626.7 1208 66.2
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 1626.7 1216 65.7
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 1624.4 1214 67.2
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1614.0 1228 65.8
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 1607.0 1305 61.8
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 1603.2 1234 65.6
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1601.6 1216 65.2
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1601.6 1208 65.9
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 1592.0 1211 66.3
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1584.7 1222 64.8
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1582.8 1238 64.0
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1582.0 1231 64.3
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 1581.6 1187 65.7
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1578.1 1208 64.7
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 1578.1 1213 64.9
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1571.6 1216 64.2
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 1555.0 1078 71.9
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1543.1 1136 69.0
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 1531.9 1219 62.2
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1496.5 968 77.8
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1488.8 1212 62.7
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1427.9 1183 61.9
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1399.0 1261 57.9
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1302.0 1350 53.9
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1243.4 901 68.5
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1190.3 938 63.1
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1132.1 762 73.9
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1119.4 901 61.3
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1117.8 1274 48.1
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1115.9 1271 48.1
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1109.7 1116 51.8
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 1.7e-291 1006.5 700 71.1
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 2.9e-291 1005.7 706 72.2
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 1.9e-279 966.5 729 66.8
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.1e-258 897.5 1196 44.1
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 8.7e-256 887.9 1231 43.5
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 4.1e-245 852.4 699 61.9
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.0e-239 833.6 702 59.3
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 8.2e-230 801.6 724 58.3
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.6e-209 734.2 851 47.9
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 1.2e-207 728.0 491 71.9
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 2.6e-207 726.9 512 69.3
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.5e-204 716.5 523 68.1
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.0e-192 678.3 433 76.0
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 4.6e-188 662.9 876 47.3
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.3e-179 634.8 573 61.1
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.7e-174 617.8 498 60.2
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 1.0e-163 582.0 783 43.2
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 2.8e-153 547.4 434 63.8
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 7.9e-140 502.7 402 64.4
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.8e-137 494.2 383 64.2
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 5.5e-133 479.9 301 75.4
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 8.8e-115 419.5 287 73.2
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 1.1e-109 402.5 818 34.5
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 1.2e-108 399.1 374 55.3
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.0e-107 394.4 429 49.9
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 1.7e-102 378.6 254 73.6
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.7e-100 370.5 430 53.3
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 5.7e-90 337.0 1085 28.1
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 5.7e-90 337.0 266 64.7
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 9.8e-90 336.3 274 62.8
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.7e-86 325.5 296 56.4
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 5.2e-83 313.9 186 81.2
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 5.6e-61 240.7 200 61.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 8.1e-60 236.9 168 69.6
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 4.9e-49 201.1 244 47.5
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 5.4e-48 197.6 203 53.7
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 1.8e-43 182.6 133 66.9
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 4.3e-37 161.4 101 78.2
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 6.9e-35 154.1 129 61.2
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 7.1e-32 144.1 195 41.0
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 9.3e-32 143.7 108 64.8
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 3.5e-31 141.7 162 48.8
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.5e-31 141.7 103 66.0
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 1.1e-27 130.2 115 60.9
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 5.3e-27 127.9 132 50.8
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.7e-25 122.9 109 57.8
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 1.9e-24 119.4 118 53.4
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 9.3e-24 117.1 97 59.8
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 1.5e-21 109.8 127 46.5
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 4.3e-21 108.2 96 56.2
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.6e-20 106.3 54 85.2
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 8.2e-20 104.0 124 50.0
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 1.2e-18 100.1 69 63.8
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 5.9e-18 97.8 144 45.8
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 4.6e-15 88.2 71 64.8
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 6.7e-14 84.3 99 50.5
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 2.8e-12 79.0 63 63.5
Sabra10G0144400 Salix brachista HOM05D003492 ORTHO05D019467 2.7e-07 62.4 131 35.9
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 3.6e-07 62.0 70 51.4
Actinidia02220 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.6e-07 61.6 38 73.7


User provided reference genes

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