Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1318 Fragaria x ananassa HOM05D005813 ORTHO05D007310 3.2e-229 798.1 414 100.0
FAN01G0479 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.7e-214 749.2 392 99.0
FvH4_7g11840 Fragaria vesca HOM05D005813 ORTHO05D007310 1.4e-213 746.1 392 98.7
FAN06G0614 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.4e-213 746.1 392 98.7
FAN10G1195 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.6e-212 742.7 392 96.9
FAN10G2798 Fragaria x ananassa HOM05D005813 ORTHO05D007310 6.0e-212 740.7 392 98.2
FAN06G1564 Fragaria x ananassa HOM05D005813 ORTHO05D007310 2.5e-210 735.3 404 95.5
RcHm_v2.0_Chr1g0350521 Rosa chinensis HOM05D005813 ORTHO05D007310 1.6e-196 689.5 392 90.1
MD02G1204700 Malus domestica HOM05D005813 ORTHO05D007310 3.8e-182 641.7 396 80.8
Prupe.2G145000 Prunus persica HOM05D005813 ORTHO05D007310 1.4e-181 639.8 395 82.8
Duzib133G0639 Durio zibethinus HOM05D005813 ORTHO05D007310 3.6e-172 608.6 396 77.0
Duzib138G0196 Durio zibethinus HOM05D005813 ORTHO05D007310 1.8e-171 606.3 397 76.8
MD07G1121300 Malus domestica HOM05D005813 ORTHO05D007310 5.1e-171 604.7 396 77.0
TWI59G1428 Tripterygium wilfordii HOM05D005813 ORTHO05D007310 2.5e-170 602.4 398 75.1
GSVIVG01027606001 Vitis vinifera HOM05D005813 ORTHO05D007310 7.4e-170 600.9 398 74.1
Potri.014G069400 Populus trichocarpa HOM05D005813 ORTHO05D007310 1.4e-168 596.7 396 75.0
CiPaw.01G262200 Carya illinoinensis HOM05D005813 ORTHO05D007310 6.9e-168 594.3 396 75.8
CiPaw.02G167800 Carya illinoinensis HOM05D005813 ORTHO05D007310 1.5e-167 593.2 396 74.2
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 3.4e-167 592.0 396 73.7
Haze_16813 Corylus avellana HOM05D005813 ORTHO05D007310 4.5e-167 591.7 397 76.8
PGR031G3848 Punica granatum HOM05D005813 ORTHO05D007310 7.7e-167 590.9 397 74.1
Sabra02G0115400 Salix brachista HOM05D005813 ORTHO05D007310 7.7e-167 590.9 398 74.4
Cfa001724 Carpinus fangiana HOM05D005813 ORTHO05D007310 1.7e-166 589.7 396 74.2
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 1.7e-166 589.7 396 74.7
Sabra02G0117100 Salix brachista HOM05D005813 ORTHO05D007310 2.2e-166 589.3 398 74.1
Manes.05G045300 Manihot esculenta HOM05D005813 ORTHO05D007310 8.5e-166 587.4 398 74.1
Glyma.18G220700 Glycine max HOM05D005813 ORTHO05D007310 1.9e-165 586.3 395 72.7
QL08p052527 Quercus lobata HOM05D005813 ORTHO05D007310 3.2e-165 585.5 396 74.2
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 7.2e-165 584.3 396 72.0
Dinv43710 Davidia involucrata HOM05D005813 ORTHO05D007310 2.1e-164 582.8 405 72.3
arahy.Tifrunner.gnm1.ann1.4B5N4V Arachis hypogaea HOM05D005813 ORTHO05D007310 3.6e-164 582.0 398 71.1
MELO3C006191.2 Cucumis melo HOM05D005813 ORTHO05D007310 4.7e-164 581.6 396 72.2
arahy.Tifrunner.gnm1.ann1.DKE7V3 Arachis hypogaea HOM05D005813 ORTHO05D007310 6.1e-164 581.3 398 70.9
Ca_11657_v3 Cicer arietinum L. HOM05D005813 ORTHO05D007310 7.9e-164 580.9 396 71.7
ClCG05G002290 Citrullus lanatus HOM05D005813 ORTHO05D007310 1.0e-163 580.5 396 72.2
Lj7A528T62 Lonicera japonica HOM05D005813 ORTHO05D007310 3.9e-163 578.6 402 71.9
Glyma.09G269300 Glycine max HOM05D005813 ORTHO05D007310 6.7e-163 577.8 401 71.3
Gohir.A08G134600 Gossypium hirsutum HOM05D005813 ORTHO05D007310 6.7e-163 577.8 397 76.3
CsaV3_3G009700 Cucumis sativus L. HOM05D005813 ORTHO05D007310 8.8e-163 577.4 396 72.0
Phvul.008G076400 Phaseolus vulgaris HOM05D005813 ORTHO05D007310 1.5e-162 576.6 395 74.7
Potri.002G148100 Populus trichocarpa HOM05D005813 ORTHO05D007310 2.0e-162 576.2 398 74.4
Medtr7g074890 Medicago truncatula HOM05D005813 ORTHO05D007310 3.3e-162 575.5 396 71.5
Lalb_Chr03g0039571 Lupinus albus HOM05D005813 ORTHO05D007310 4.4e-162 575.1 395 71.1
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 7.4e-162 574.3 396 71.0
Migut.B01633 Erythranthe guttata HOM05D005813 ORTHO05D007310 1.3e-161 573.5 400 71.8
TPR.G29407 Trifolium pratense HOM05D005813 ORTHO05D007310 1.3e-161 573.5 396 71.5
Gohir.D08G155500 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.7e-161 573.2 397 76.1
Gorai.004G161700 Gossypium raimondii HOM05D005813 ORTHO05D007310 1.7e-161 573.2 397 76.1
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 1.7e-161 573.2 395 73.2
Sed0000354 Sechium edule HOM05D005813 ORTHO05D007310 4.8e-161 571.6 396 73.0
CSS0030666 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 8.2e-161 570.9 396 72.0
CSS0042195 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 8.2e-161 570.9 396 72.0
CANSAT56G4177 Cannabis sativa HOM05D005813 ORTHO05D007310 1.4e-160 570.1 398 73.1
THA.LOC104817009 Tarenaya hassleriana HOM05D005813 ORTHO05D007310 1.4e-160 570.1 397 71.8
Cpa.g.sc18.111 Carica papaya HOM05D005813 ORTHO05D007310 5.3e-160 568.2 398 73.9
Thhalv10028676m.g Eutrema salsugineum HOM05D005813 ORTHO05D007310 1.2e-159 567.0 396 73.7
Ciclev10020183m.g Citrus clementina HOM05D005813 ORTHO05D007310 3.5e-159 565.5 399 70.7
CARHR248130 Cardamine hirsuta HOM05D005813 ORTHO05D007310 1.0e-158 563.9 400 70.2
Sp6g00150 Schrenkiella parvula HOM05D005813 ORTHO05D007310 1.3e-158 563.5 396 70.7
Hund27345 Selenicereus undatus HOM05D005813 ORTHO05D007310 1.3e-158 563.5 396 69.4
AT4G00090 Arabidopsis thaliana HOM05D005813 ORTHO05D007310 1.7e-158 563.1 396 70.5
Sc02g0002610 Simmondsia chinensis HOM05D005813 ORTHO05D007310 1.7e-158 563.1 397 69.0
Cc02_g23900 Coffea canephora HOM05D005813 ORTHO05D007310 2.9e-158 562.4 405 68.9
MBI04_g35272_MAGBIO Magnolia biondii HOM05D005813 ORTHO05D007310 2.9e-158 562.4 394 69.0
TAR374G0529 Trochodendron aralioides HOM05D005813 ORTHO05D007310 3.8e-158 562.0 396 69.4
MSTRG.17192 Avicennia marina HOM05D005813 ORTHO05D007310 5.0e-158 561.6 402 69.4
Eucgr.D02453 Eucalyptus grandis HOM05D005813 ORTHO05D007310 5.0e-158 561.6 398 69.8
Nn4g26391 Nelumbo nucifera HOM05D005813 ORTHO05D007310 1.5e-157 560.1 393 70.7
SGA_v2.0_scaffold153G37009 Striga asiatica HOM05D005813 ORTHO05D007310 1.5e-157 560.1 402 70.1
Nn1g01240 Nelumbo nucifera HOM05D005813 ORTHO05D007310 2.5e-157 559.3 395 69.6
Atru.chr5.306 Acer truncatum HOM05D005813 ORTHO05D007310 4.2e-157 558.5 399 71.4
AL6G53420 Arabidopsis lyrata HOM05D005813 ORTHO05D007310 2.1e-156 556.2 396 70.7
C09p00110 Brassica napus HOM05D005813 ORTHO05D007310 8.0e-156 554.3 396 69.2
BraA09t35685Z Brassica rapa HOM05D005813 ORTHO05D007310 8.0e-156 554.3 396 69.2
Gorai.004G040800 Gossypium raimondii HOM05D005813 ORTHO05D007310 8.0e-156 554.3 442 63.6
Sopen01g037050 Solanum pennellii HOM05D005813 ORTHO05D007310 1.0e-155 553.9 405 69.6
BcaC04g24202 Brassica carinata HOM05D005813 ORTHO05D007310 1.4e-155 553.5 396 68.7
BolC9t52946H Brassica oleracea HOM05D005813 ORTHO05D007310 1.4e-155 553.5 396 68.7
Solyc01g091310.3 Solanum lycopersicum HOM05D005813 ORTHO05D007310 3.0e-155 552.4 405 67.2
SalBow5G4545 Salvia bowleyana HOM05D005813 ORTHO05D007310 6.7e-155 551.2 402 72.4
Carub.0006s3714 Capsella rubella HOM05D005813 ORTHO05D007310 2.0e-154 549.7 403 68.0
BcaB01g02210 Brassica carinata HOM05D005813 ORTHO05D007310 2.6e-154 549.3 396 67.9
Nitab4.5_0004917g0040 Nicotiana tabacum HOM05D005813 ORTHO05D007310 4.4e-154 548.5 402 67.2
Oeu055488.1 Olea europaea HOM05D005813 ORTHO05D007310 4.4e-154 548.5 430 69.3
PSO478G4467 Papaver somniferum HOM05D005813 ORTHO05D007310 7.5e-154 547.7 393 68.4
PSO782G1692 Papaver somniferum HOM05D005813 ORTHO05D007310 1.7e-153 546.6 394 67.8
unitig_749.g14372 Utricularia gibba HOM05D005813 ORTHO05D007310 9.1e-152 540.8 403 66.5
Ah.05g174210 Amaranthus hybridus HOM05D005813 ORTHO05D007310 1.2e-151 540.4 398 67.1
Sed0028100 Sechium edule HOM05D005813 ORTHO05D007310 1.6e-151 540.0 396 68.9
unitig_76.g29089 Utricularia gibba HOM05D005813 ORTHO05D007310 1.6e-151 540.0 402 66.4
HanXRQChr04g0122421 Helianthus annuus HOM05D005813 ORTHO05D007310 4.5e-151 538.5 401 68.6
Lsat_1_v5_gn_7_7160 Lactuca sativa HOM05D005813 ORTHO05D007310 1.0e-150 537.3 401 69.1
ATR0810G089 Amborella trichopoda HOM05D005813 ORTHO05D007310 1.6e-148 530.0 396 66.2
Aa31LG5G9310 Aethionema arabicum HOM05D005813 ORTHO05D007310 2.1e-148 529.6 426 64.1
Aqoxy7G00631 Aquilegia oxysepala HOM05D005813 ORTHO05D007310 6.1e-148 528.1 393 68.7
EL10Ac1g00888 Beta vulgaris HOM05D005813 ORTHO05D007310 1.8e-147 526.6 398 65.1
Rhsim01G0147300 Rhododendron simsii HOM05D005813 ORTHO05D007310 4.0e-147 525.4 427 66.3
AUR62004213 Chenopodium quinoa HOM05D005813 ORTHO05D007310 6.8e-147 524.6 397 65.0
CDE09G1050 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 1.1e-144 517.3 391 66.0
CDE11G1084 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 1.4e-144 516.9 391 65.5
Peaxi162Scf00013g03441 Petunia axillaris HOM05D005813 ORTHO05D007310 5.9e-143 511.5 400 65.2
vmacro21010 Vaccinium macrocarpon HOM05D005813 ORTHO05D007310 6.8e-139 498.0 411 63.3
Psat3g115920 Pisum sativum HOM05D005813 ORTHO05D007310 2.8e-137 492.7 396 64.1
Actinidia12685 Actinidia chinensis HOM05D005813 ORTHO05D007310 1.2e-135 487.3 400 63.8
SEGI_07293 Sequoiadendron giganteum HOM05D005813 ORTHO05D007310 1.6e-135 486.9 391 63.2
Nitab4.5_0000457g0240 Nicotiana tabacum HOM05D005813 ORTHO05D007310 1.5e-133 480.3 346 67.9
HPP92_003519 Vanilla planifolia HOM05D005813 ORTHO05D007310 5.7e-130 468.4 387 61.2
AUR62013635 Chenopodium quinoa HOM05D005813 ORTHO05D007310 1.8e-128 463.4 408 59.1
COL.COLO4_12543 Corchorus olitorius HOM05D005813 ORTHO05D007310 8.0e-124 448.0 396 60.1
Zm00001eb065090 Zea mays HOM05D005813 ORTHO05D007310 1.0e-123 447.6 391 60.1
Mapoly0037s0016 Marchantia polymorpha HOM05D005813 ORTHO05D007310 4.7e-116 422.2 391 57.0
SHI01708 Sapria himalayana HOM05D005813 ORTHO05D007310 5.2e-115 418.7 392 56.1
AagrBONN_evm.TU.Sc2ySwM_117.33 Anthoceros agrestis HOM05D005813 ORTHO05D007310 1.1e-109 401.0 421 51.5
Pp3c19_7620 Physcomitrium patens HOM05D005813 ORTHO05D007310 1.1e-107 394.4 397 52.9
Psat3g202640 Pisum sativum HOM05D005813 ORTHO05D007310 8.9e-107 391.3 306 65.4
A09p00750 Brassica napus HOM05D005813 ORTHO05D007310 3.4e-106 389.4 240 77.5
DCAR_015903 Daucus carota HOM05D005813 ORTHO05D007310 6.4e-105 385.2 321 62.0
PSO170G3521 Papaver somniferum HOM05D005813 ORTHO05D007310 3.2e-104 382.9 329 59.0
PGSC0003DMG400012776 Solanum tuberosum HOM05D005813 ORTHO05D007310 3.2e-104 382.9 234 77.8
CBR_g23070 Chara braunii HOM05D005813 ORTHO05D007310 2.7e-103 379.8 326 57.4
SMO367G0685 Selaginella moellendorffii HOM05D005813 ORTHO05D007310 2.5e-101 373.2 320 56.6
CBR_g21297 Chara braunii HOM05D005813 ORTHO05D007310 2.0e-98 363.6 324 55.2
PSO782G5041 Papaver somniferum HOM05D005813 ORTHO05D007310 1.0e-94 351.3 290 59.7
PSO675G1684 Papaver somniferum HOM05D005813 ORTHO05D007310 1.3e-70 271.2 203 64.5
Actinidia33466 Actinidia chinensis HOM05D005813 ORTHO05D007310 2.2e-60 237.3 144 79.2
Cre02.g102450 Chlamydomonas reinhardtii HOM05D005813 ORTHO05D007310 7.7e-50 202.2 318 38.1
PSO478G0826 Papaver somniferum HOM05D005813 ORTHO05D007310 5.5e-48 196.1 134 71.6
MCO05G082 Micromonas commoda HOM05D005813 ORTHO05D007310 1.5e-37 161.4 319 32.6
PSO478G4170 Papaver somniferum HOM05D005813 ORTHO05D007310 2.8e-23 114.0 130 49.2
MELO3C031411.2 Cucumis melo HOM05D000544 ORTHO05D169468 1.9e-08 64.7 62 53.2
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 4.7e-07 60.1 37 70.3
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 1.1e-06 58.9 193 25.9
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 1.4e-06 58.5 193 25.9
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 1.8e-06 58.2 165 24.2
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 2.3e-06 57.8 184 26.6
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 2.3e-06 57.8 188 23.4
Zm00001eb386980 Zea mays HOM05D000002 ORTHO05D006339 2.3e-06 57.8 142 28.9
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 4.0e-06 57.0 150 26.7
Solyc03g120080.4 Solanum lycopersicum HOM05D004669 ORTHO05D005767 8.9e-06 55.8 188 22.9
Sopen03g038950 Solanum pennellii HOM05D004669 ORTHO05D005767 8.9e-06 55.8 188 22.9


User provided reference genes

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