Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 9.2e-182 640.2 344 100.0
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 3.3e-171 605.1 342 96.8
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 1.1e-169 600.1 342 96.2
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 8.3e-167 590.5 342 94.7
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 3.3e-163 578.6 343 93.6
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 6.0e-141 504.6 358 81.0
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 6.8e-68 261.9 350 52.6
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 2.9e-66 256.5 338 53.8
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 6.4e-66 255.4 365 50.7
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 1.1e-62 244.6 343 50.4
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 9.5e-62 241.5 338 50.3
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 3.6e-61 239.6 327 52.0
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 8.9e-60 235.0 439 43.7
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 1.5e-59 234.2 280 55.0
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 2.0e-59 233.8 348 46.8
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 5.8e-59 232.3 338 51.2
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 5.8e-59 232.3 352 47.2
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 1.3e-58 231.1 344 48.3
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 2.2e-58 230.3 349 48.4
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 2.2e-58 230.3 349 46.4
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 6.4e-58 228.8 345 51.0
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 8.3e-58 228.4 345 47.0
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 1.4e-57 227.6 340 47.6
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 5.4e-57 225.7 341 47.2
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 1.2e-56 224.6 343 48.7
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 4.6e-56 222.6 341 48.7
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 1.7e-55 220.7 348 46.3
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 8.1e-53 211.8 338 46.4
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 1.4e-52 211.1 339 46.3
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 1.4e-52 211.1 355 45.9
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 1.8e-52 210.7 349 45.3
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 1.8e-52 210.7 361 47.4
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 3.1e-52 209.9 359 46.5
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 5.2e-52 209.1 343 46.6
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 6.8e-52 208.8 354 46.6
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 6.8e-52 208.8 339 45.1
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 2.0e-51 207.2 318 47.8
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 2.0e-51 207.2 342 48.5
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 2.6e-51 206.8 379 44.3
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 3.4e-51 206.5 361 45.4
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 3.4e-51 206.5 365 42.5
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 4.4e-51 206.1 343 44.9
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 9.8e-51 204.9 338 45.3
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 1.4e-49 201.1 348 47.4
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 1.4e-49 201.1 217 56.2
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 4.1e-49 199.5 340 44.1
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 5.4e-49 199.1 354 44.4
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 5.4e-49 199.1 356 43.0
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 7.1e-49 198.7 361 44.9
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 3.5e-48 196.4 345 44.6
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 3.5e-48 196.4 341 45.7
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 3.5e-48 196.4 341 44.3
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 4.6e-48 196.1 348 46.3
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 6.0e-48 195.7 351 44.2
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 7.8e-48 195.3 354 45.5
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 7.8e-48 195.3 357 43.4
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 7.8e-48 195.3 349 42.7
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 1.0e-47 194.9 356 44.7
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 1.3e-47 194.5 342 46.2
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 6.6e-47 192.2 340 46.2
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 4.3e-46 189.5 354 42.4
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 7.3e-46 188.7 218 56.0
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 7.3e-46 188.7 249 52.2
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 1.2e-45 188.0 368 42.9
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.2e-45 188.0 334 44.9
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 2.1e-45 187.2 230 53.9
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 2.1e-45 187.2 319 46.7
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 1.1e-44 184.9 312 46.2
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.4e-44 184.5 336 42.3
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 5.2e-44 182.6 348 41.4
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 2.0e-43 180.6 318 44.7
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 2.0e-43 180.6 341 41.6
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 3.4e-43 179.9 339 41.9
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 4.4e-43 179.5 345 43.8
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 5.8e-43 179.1 357 42.6
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 5.8e-43 179.1 265 46.0
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 7.6e-43 178.7 350 42.3
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 1.7e-42 177.6 358 42.7
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 3.7e-42 176.4 228 53.1
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 4.9e-42 176.0 140 67.1
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 1.1e-41 174.9 338 44.7
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 1.4e-41 174.5 335 42.1
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 7.8e-40 168.7 127 66.9
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 8.6e-39 165.2 242 45.0
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 1.1e-38 164.9 347 41.2
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 2.5e-38 163.7 327 43.4
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 9.6e-38 161.8 355 41.4
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 1.1e-36 158.3 360 41.1
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 1.1e-36 158.3 227 49.3
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 1.8e-36 157.5 389 39.1
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 4.0e-36 156.4 360 40.6
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 6.8e-36 155.6 386 39.1
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 8.9e-36 155.2 257 43.6
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 8.9e-36 155.2 246 45.1
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 3.4e-35 153.3 213 46.5
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 1.3e-34 151.4 334 36.8
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.3e-34 151.4 215 48.8
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.3e-34 151.4 211 47.9
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 2.9e-34 150.2 257 43.2
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 3.8e-34 149.8 344 40.4
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.4e-33 147.9 211 46.9
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.9e-33 147.5 339 36.6
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.9e-33 147.5 334 35.0
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 4.2e-33 146.4 339 36.3
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.6e-32 144.4 193 51.3
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 5.1e-31 139.4 215 45.6
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 3.6e-29 133.3 174 50.0
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 1.8e-28 131.0 203 43.3
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 5.3e-28 129.4 403 34.5
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 3.8e-26 123.2 123 52.0
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 8.4e-26 122.1 426 31.5
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 1.4e-25 121.3 98 65.3
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 1.6e-24 117.9 350 36.3
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 1.0e-23 115.2 79 68.4
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.0e-23 115.2 176 44.9
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 3.9e-23 113.2 351 36.2
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 6.6e-23 112.5 353 36.3
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 7.4e-22 109.0 123 57.7
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 2.4e-20 104.0 207 42.0
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 3.1e-20 103.6 110 50.9
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 9.0e-20 102.1 216 42.1
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 5.8e-19 99.4 379 32.5
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 1.1e-17 95.1 99 51.5
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 1.1e-12 78.6 289 32.2
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 2.2e-10 70.9 49 69.4
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 2.1e-08 64.3 116 31.9
Cre02.g105050 Chlamydomonas reinhardtii HOM05D006277 ORTHO05D007673 1.0e-07 62.0 133 32.3


User provided reference genes

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