Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1210 Fragaria x ananassa HOM05D001876 ORTHO05D019192 8.5e-159 563.9 352 100.0
FAN06G0414 Fragaria x ananassa HOM05D001876 ORTHO05D019192 3.7e-85 319.3 322 69.6
FvH4_7g10420 Fragaria vesca HOM05D001876 ORTHO05D019192 4.5e-83 312.4 321 70.1
FAN06G3562 Fragaria x ananassa HOM05D001876 ORTHO05D019192 8.2e-77 291.6 313 67.1
FAN10G1274 Fragaria x ananassa HOM05D030657 ORTHO05D019192 6.1e-64 248.8 437 51.9
FAN01G0741 Fragaria x ananassa HOM05D001876 ORTHO05D019192 2.0e-59 233.8 297 53.9
FvH4_3g41972 Fragaria vesca HOM05D001876 ORTHO05D002002 1.4e-31 141.4 197 52.3
FAN11G3885 Fragaria x ananassa HOM05D001876 ORTHO05D002002 6.6e-26 122.5 239 42.3
FAN21G2243 Fragaria x ananassa HOM05D001876 ORTHO05D002002 5.6e-25 119.4 303 39.9
FAN25G1930 Fragaria x ananassa HOM05D001876 ORTHO05D002002 9.5e-25 118.6 303 41.3
Atru.chr2.3845 Acer truncatum HOM05D001876 ORTHO05D002002 3.7e-21 106.7 257 36.2
Haze_09897 Corylus avellana HOM05D001876 ORTHO05D002002 4.9e-21 106.3 182 41.8
Cfa016942 Carpinus fangiana HOM05D001876 ORTHO05D002002 1.1e-20 105.1 200 39.0
FAN16G1749 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.9e-20 104.4 284 41.2
Nitab4.5_0000152g0190 Nicotiana tabacum HOM05D001876 ORTHO05D002002 5.4e-20 102.8 250 35.2
Nitab4.5_0001303g0100 Nicotiana tabacum HOM05D001876 ORTHO05D002002 5.4e-20 102.8 258 34.5
Duzib170G0551 Durio zibethinus HOM05D001876 ORTHO05D002002 1.2e-19 101.7 195 39.0
Cpa.g.sc27.194 Carica papaya HOM05D001876 ORTHO05D002002 1.6e-19 101.3 257 33.9
Glyma.18G072400 Glycine max HOM05D001876 ORTHO05D002002 1.6e-19 101.3 265 34.7
Phvul.006G060500 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 1.6e-19 101.3 242 34.7
RcHm_v2.0_Chr4g0407801 Rosa chinensis HOM05D000005 ORTHO05D000012 2.7e-19 100.5 206 40.8
FvH4_3g41980 Fragaria vesca HOM05D001876 ORTHO05D002002 3.5e-19 100.1 291 39.5
Hma1.2p1_0193F.1_g084140 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 3.5e-19 100.1 182 40.7
Hma1.2p1_2995F.1_g331450 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 3.5e-19 100.1 182 40.7
Rhsim06G0234000 Rhododendron simsii HOM05D001876 ORTHO05D002002 7.8e-19 99.0 99 54.5
Dinv06828 Davidia involucrata HOM05D001876 ORTHO05D002002 1.0e-18 98.6 251 33.1
Gohir.D08G036200 Gossypium hirsutum HOM05D001876 ORTHO05D002002 1.0e-18 98.6 257 35.4
Gorai.004G034200 Gossypium raimondii HOM05D001876 ORTHO05D002002 1.0e-18 98.6 257 35.4
Potri.016G002100 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.0e-18 98.6 182 39.6
Duzib213G0425 Durio zibethinus HOM05D001876 ORTHO05D002002 5.0e-18 96.3 185 40.0
Lj6g0010416 Lotus japonicus HOM05D001876 ORTHO05D002002 5.0e-18 96.3 98 54.1
Nn1g07691 Nelumbo nucifera HOM05D001876 ORTHO05D002002 5.0e-18 96.3 259 32.4
Gohir.A08G025700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 8.6e-18 95.5 256 35.2
TAR627G0307 Trochodendron aralioides HOM05D001876 ORTHO05D002002 8.6e-18 95.5 98 53.1
TPR.G17949 Trifolium pratense HOM05D001876 ORTHO05D002002 1.1e-17 95.1 98 54.1
arahy.Tifrunner.gnm1.ann1.SQBY3A Arachis hypogaea HOM05D001876 ORTHO05D002002 1.5e-17 94.7 98 53.1
Cfa000007 Carpinus fangiana HOM05D001876 ORTHO05D002002 3.3e-17 93.6 181 38.7
Peaxi162Scf00006g00717 Petunia axillaris HOM05D001876 ORTHO05D002002 3.3e-17 93.6 182 40.7
Ca_14851_v3 Cicer arietinum L. HOM05D001876 ORTHO05D002002 5.6e-17 92.8 98 55.1
DCAR_017598 Daucus carota HOM05D001876 ORTHO05D002002 5.6e-17 92.8 243 32.1
Sabra16G0318400 Salix brachista HOM05D001876 ORTHO05D002002 5.6e-17 92.8 276 31.9
Carub.0003s1268 Capsella rubella HOM05D001876 ORTHO05D002002 9.5e-17 92.0 99 51.5
arahy.Tifrunner.gnm1.ann1.49CTIT Arachis hypogaea HOM05D001876 ORTHO05D002002 1.2e-16 91.7 98 52.0
Lalb_Chr20g0115301 Lupinus albus HOM05D001876 ORTHO05D002002 1.2e-16 91.7 98 52.0
RcHm_v2.0_Chr4g0389341 Rosa chinensis HOM05D001876 ORTHO05D002002 2.8e-16 90.5 81 64.2
SHI21632 Sapria himalayana HOM05D001876 ORTHO05D002002 2.8e-16 90.5 210 34.8
FAN21G1995 Fragaria x ananassa HOM05D001876 ORTHO05D002002 3.6e-16 90.1 78 69.2
Haze_07052 Corylus avellana HOM05D001876 ORTHO05D002002 4.7e-16 89.7 194 37.6
Hund01842 Selenicereus undatus HOM05D001876 ORTHO05D002002 8.1e-16 89.0 248 32.3
AT3G13300 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 1.1e-15 88.6 99 48.5
SGA_v2.0_scaffold42G15938 Striga asiatica HOM05D001876 ORTHO05D002002 1.1e-15 88.6 177 38.4
TAR626G0018 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.8e-15 87.8 246 32.1
QL05p066377 Quercus lobata HOM05D001876 ORTHO05D002002 2.3e-15 87.4 244 31.1
RcHm_v2.0_Chr5g0075171 Rosa chinensis HOM05D001876 ORTHO05D002002 4.0e-15 86.7 263 33.5
FAN25G2172 Fragaria x ananassa HOM05D001876 ORTHO05D002002 5.2e-15 86.3 172 41.9
PGR083G2540 Punica granatum HOM05D001876 ORTHO05D002002 6.8e-15 85.9 97 54.6
VMungo0540G1408 Vigna mungo HOM05D001876 ORTHO05D002002 8.9e-15 85.5 266 32.0
RcHm_v2.0_Chr4g0389211 Rosa chinensis HOM05D001876 ORTHO05D019192 1.2e-14 85.1 76 64.5
TWI38G1429 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 1.2e-14 85.1 304 29.6
TAR629G2148 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.2e-14 85.1 246 30.9
MBI11_g40896_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.5e-14 84.7 98 51.0
Peaxi162Scf00232g00036 Petunia axillaris HOM05D001876 ORTHO05D002002 1.5e-14 84.7 281 32.4
vmacro09608 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 2.0e-14 84.3 240 32.9
arahy.Tifrunner.gnm1.ann1.ADA7T8 Arachis hypogaea HOM05D001876 ORTHO05D002002 9.8e-14 82.0 281 31.3
arahy.Tifrunner.gnm1.ann1.LQ166S Arachis hypogaea HOM05D001876 ORTHO05D002002 1.7e-13 81.3 280 31.4
Medtr3g061160 Medicago truncatula HOM05D001876 ORTHO05D002002 1.7e-13 81.3 257 31.1
Dinv10376 Davidia involucrata HOM05D001876 ORTHO05D002002 2.9e-13 80.5 244 32.4
Potri.011G166400 Populus trichocarpa HOM05D001876 ORTHO05D002002 2.9e-13 80.5 287 31.7
HanXRQChr11g0334581 Helianthus annuus HOM05D001876 ORTHO05D002002 3.7e-13 80.1 237 31.2
AUR62035638 Chenopodium quinoa HOM05D001876 ORTHO05D002002 4.9e-13 79.7 246 29.7
Potri.001G469500 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.9e-12 77.8 297 31.0
Aa31LG10G500 Aethionema arabicum HOM05D001876 ORTHO05D002002 2.4e-12 77.4 269 27.9
AL3G25120 Arabidopsis lyrata HOM05D001876 ORTHO05D002002 4.1e-12 76.6 259 28.2
MBI15_g35676_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 7.1e-12 75.9 243 29.2
MBI15_g41024_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 7.1e-12 75.9 178 34.3
MBI15_g00880_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 9.2e-12 75.5 181 34.8
CiPaw.10G084200 Carya illinoinensis HOM05D001876 ORTHO05D002002 1.6e-11 74.7 306 28.4
CiPaw.09G112100 Carya illinoinensis HOM05D001876 ORTHO05D002002 2.7e-11 73.9 302 28.1
THA.LOC104810297 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 3.5e-11 73.6 259 27.8
Potri.006G001400 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.0e-10 72.0 181 32.6
GSVIVG01014783001 Vitis vinifera HOM05D001876 ORTHO05D002002 1.0e-10 72.0 279 28.7
Sc07g0002250 Simmondsia chinensis HOM05D001876 ORTHO05D002002 1.3e-10 71.6 181 33.1
Rhsim04G0009400 Rhododendron simsii HOM05D001876 ORTHO05D002002 3.9e-10 70.1 267 30.3
HPP92_026159 Vanilla planifolia HOM05D001876 ORTHO05D002002 3.9e-10 70.1 86 46.5
Actinidia03661 Actinidia chinensis HOM05D001876 ORTHO05D002002 5.1e-10 69.7 153 36.6
Actinidia10583 Actinidia chinensis HOM05D001876 ORTHO05D002002 5.1e-10 69.7 267 30.0
Sp3g11500 Schrenkiella parvula HOM05D001876 ORTHO05D002002 5.1e-10 69.7 220 27.7
GSVIVG01006976001 Vitis vinifera HOM05D001876 ORTHO05D002002 8.6e-10 68.9 98 43.9
DCAR_013771 Daucus carota HOM05D001876 ORTHO05D002002 1.1e-09 68.6 99 42.4
GSVIVG01037795001 Vitis vinifera HOM05D001876 ORTHO05D002002 1.1e-09 68.6 99 40.4
FAN06G1630 Fragaria x ananassa HOM05D030657 ORTHO05D201306 1.5e-09 68.2 123 47.2
FAN06G4839 Fragaria x ananassa HOM05D030657 ORTHO05D205629 1.5e-09 68.2 123 47.2
BcaC05g29191 Brassica carinata HOM05D001876 ORTHO05D002002 1.9e-09 67.8 86 41.9
BolC5t34127H Brassica oleracea HOM05D001876 ORTHO05D002002 1.9e-09 67.8 86 41.9
Psat5g163240 Pisum sativum HOM05D001876 ORTHO05D002002 1.9e-09 67.8 75 49.3
Prupe.6G032100 Prunus persica HOM05D001876 ORTHO05D002002 2.5e-09 67.4 223 32.7
Pp3c15_3440 Physcomitrium patens HOM05D001876 ORTHO05D002002 4.3e-09 66.6 98 41.8
Pp3c15_3450 Physcomitrium patens HOM05D001876 ORTHO05D002002 4.3e-09 66.6 98 41.8
Pp3c9_4880 Physcomitrium patens HOM05D001876 ORTHO05D002002 4.3e-09 66.6 201 30.8
Lsat_1_v5_gn_7_116441 Lactuca sativa HOM05D001876 ORTHO05D002002 5.6e-09 66.2 86 46.5
THA.LOC104822709 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 7.3e-09 65.9 183 29.0
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 1.2e-08 65.1 210 30.5
SGA_v2.0_scaffold8G04429 Striga asiatica HOM05D001876 ORTHO05D002002 3.6e-08 63.5 179 33.5
CDE10G0998 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 6.2e-08 62.8 228 27.2
Ah.14g085010 Amaranthus hybridus HOM05D001876 ORTHO05D002002 8.1e-08 62.4 159 32.1
Duzib235G0083 Durio zibethinus HOM05D001876 ORTHO05D002002 8.1e-08 62.4 181 29.8
Manes.05G206100 Manihot esculenta HOM05D001876 ORTHO05D002002 8.1e-08 62.4 259 26.3
C05p54620 Brassica napus HOM05D001876 ORTHO05D002002 1.1e-07 62.0 228 27.6
CDE10G0783 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 1.4e-07 61.6 202 30.2
Glyma.08G337200 Glycine max HOM05D001876 ORTHO05D002002 1.4e-07 61.6 62 53.2
Gohir.A09G067700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 1.4e-07 61.6 243 26.3
HanXRQChr03g0077781 Helianthus annuus HOM05D001876 ORTHO05D002002 1.8e-07 61.2 260 27.3
QL08p001531 Quercus lobata HOM05D001876 ORTHO05D002002 1.8e-07 61.2 224 29.5
Lalb_Chr15g0088371 Lupinus albus HOM05D001876 ORTHO05D002002 2.3e-07 60.8 100 39.0
RcHm_v2.0_Chr4g0386931 Rosa chinensis HOM05D001876 ORTHO05D002002 2.3e-07 60.8 53 62.3
AT3G13290 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 3.1e-07 60.5 269 25.3
Thecc.07G005200 Theobroma cacao HOM05D001876 ORTHO05D002002 3.1e-07 60.5 181 31.5
A05p36310 Brassica napus HOM05D001876 ORTHO05D002002 2.0e-06 57.8 223 27.4
Gorai.006G081900 Gossypium raimondii HOM05D001876 ORTHO05D002002 2.0e-06 57.8 243 25.9
MSTRG.14512 Avicennia marina HOM05D001876 ORTHO05D002002 2.6e-06 57.4 179 31.8
Dinv04380 Davidia involucrata HOM05D001876 ORTHO05D002002 2.6e-06 57.4 42 71.4
FAN25G3337 Fragaria x ananassa HOM05D001876 ORTHO05D002002 3.4e-06 57.0 132 41.7
BraA05t22432Z Brassica rapa HOM05D001876 ORTHO05D002002 4.4e-06 56.6 223 27.4
FAN11G3414 Fragaria x ananassa HOM05D001876 ORTHO05D002002 7.6e-06 55.8 87 43.7
TWI63G1743 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 7.6e-06 55.8 192 27.6


User provided reference genes

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