Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 0.0e+00 1144.8 568 100.0
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.8e-295 1016.5 509 98.6
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 5.0e-294 1013.8 511 98.6
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.5e-293 1012.3 511 98.4
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.5e-293 1011.5 511 98.4
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.0e-287 991.9 511 96.3
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.4e-275 951.8 509 93.5
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 4.4e-274 947.6 507 91.7
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 9.3e-264 913.3 516 88.6
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 2.2e-249 865.5 507 85.2
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 6.4e-249 864.0 508 84.1
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.4e-248 862.8 515 83.7
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 4.2e-248 861.3 501 85.4
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 7.1e-248 860.5 506 84.4
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 3.5e-247 858.2 511 84.1
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.5e-247 858.2 518 83.0
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 2.1e-244 849.0 511 83.2
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 4.8e-244 847.8 511 83.2
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 3.1e-243 845.1 511 82.0
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 9.0e-243 843.6 501 83.6
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 1.3e-241 839.7 509 81.3
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.8e-241 838.2 504 82.3
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.1e-240 836.6 505 83.0
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.9e-240 835.9 514 80.9
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 2.7e-239 832.0 508 81.5
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 4.6e-239 831.2 514 80.5
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.3e-238 829.7 517 80.1
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 5.7e-237 824.3 513 81.7
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 5.7e-237 824.3 519 80.0
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.7e-236 821.6 500 80.8
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 3.1e-235 818.5 501 82.0
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 3.1e-235 818.5 484 84.3
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 9.0e-235 817.0 524 78.4
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 9.0e-235 817.0 508 79.9
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 3.4e-234 815.1 529 78.8
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 5.9e-234 814.3 512 80.1
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.0e-233 813.5 413 98.1
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.0e-233 813.5 531 78.3
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.7e-233 812.8 508 80.1
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 2.5e-232 808.9 488 82.8
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.2e-231 806.6 511 78.5
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.4e-230 803.1 495 82.4
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 8.8e-230 800.4 516 78.9
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.1e-229 800.0 519 77.6
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 3.3e-229 798.5 513 78.2
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 5.7e-229 797.7 515 78.1
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 5.7e-229 797.7 513 78.2
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 9.7e-229 797.0 512 78.1
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.8e-228 795.4 504 79.8
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 3.7e-228 795.0 511 79.5
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 6.3e-228 794.3 523 77.4
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.4e-227 793.1 513 78.9
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 9.1e-227 790.4 512 78.1
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 2.0e-226 789.3 505 79.0
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.9e-225 785.4 510 77.6
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.9e-224 782.7 526 75.3
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 4.2e-224 781.6 466 83.7
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 9.4e-224 780.4 503 76.3
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 9.4e-224 780.4 500 77.4
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.2e-223 780.0 512 77.5
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.1e-223 779.2 509 77.6
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.1e-223 779.2 513 77.6
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 2.3e-222 775.8 455 84.8
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 6.7e-222 774.2 522 77.2
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 2.0e-221 772.7 493 80.1
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 3.3e-221 771.9 521 76.0
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 4.4e-221 771.5 506 75.5
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.3e-220 770.0 503 75.7
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 2.2e-220 769.2 545 72.7
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 7.7e-218 760.8 591 69.0
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 7.7e-218 760.8 546 72.2
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 2.2e-217 759.2 514 76.7
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.8e-217 758.4 505 74.5
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 5.5e-216 754.6 507 75.7
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 7.2e-216 754.2 513 73.5
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.7e-215 752.3 514 74.3
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 6.7e-214 747.7 495 75.6
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 6.7e-214 747.7 495 75.6
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.0e-213 746.1 504 73.4
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 8.2e-212 740.7 511 73.6
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.4e-211 739.2 478 77.4
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 5.3e-211 738.0 503 73.8
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 9.1e-211 737.3 512 73.8
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 4.5e-210 734.9 517 72.3
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 6.5e-209 731.1 496 76.2
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 6.5e-209 731.1 431 85.2
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.5e-205 719.9 495 73.3
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 2.4e-203 712.6 511 71.4
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.8e-201 705.3 507 70.2
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.8e-201 705.3 510 70.6
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 5.0e-201 704.9 509 70.9
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 5.5e-200 701.4 462 76.4
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.7e-199 699.1 516 69.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 6.1e-199 698.0 462 76.0
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 1.8e-198 696.4 509 70.9
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 1.2e-186 657.1 528 65.5
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.2e-183 647.1 433 74.4
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.5e-181 640.2 472 71.0
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.2e-180 636.3 509 65.6
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.0e-174 615.5 515 61.7
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 2.0e-173 613.2 545 57.8
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 6.0e-170 601.7 376 80.6
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.8e-166 590.1 451 68.5
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.8e-166 590.1 496 62.5
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.1e-166 589.3 474 64.3
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.2e-166 588.6 492 62.2
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 2.6e-165 586.3 365 82.7
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 9.2e-163 577.8 341 83.6
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.1e-160 570.9 503 60.2
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.9e-160 570.1 363 81.0
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.8e-156 555.8 366 77.6
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.9e-155 553.5 392 73.5
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 4.2e-155 552.4 360 80.3
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.9e-152 543.5 482 58.5
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.3e-152 542.7 469 61.0
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 9.0e-150 534.6 539 53.8
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 8.4e-148 528.1 497 56.7
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.7e-146 523.1 292 86.0
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 9.3e-139 498.0 495 53.7
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 3.7e-135 486.1 507 51.5
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.4e-134 484.2 337 76.6
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 7.6e-133 478.4 357 70.6
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 7.1e-131 471.9 409 63.8
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.2e-114 417.9 475 47.6
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.5e-112 411.0 468 52.4
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.7e-111 407.5 316 68.7
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.1e-106 390.6 365 60.5
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.2e-95 352.1 168 99.4
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 8.0e-90 335.5 291 63.2
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.4e-89 334.7 232 73.3
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-85 321.6 315 57.5
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.7e-82 309.7 224 69.2
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 9.8e-80 302.0 246 63.4
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.2e-72 278.5 145 89.7
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 3.4e-72 276.9 397 41.6
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 2.7e-69 267.3 147 85.7
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.0e-64 251.1 147 81.6
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 2.4e-62 244.2 311 43.1
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.2e-61 241.9 205 65.4
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 7.1e-54 216.1 327 41.3
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 1.2e-48 198.7 164 62.2
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.4e-41 174.5 193 53.9
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.2e-40 172.2 99 80.8
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.8e-37 159.5 100 74.0
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 7.6e-32 142.9 214 45.8
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 3.5e-29 134.0 68 89.7
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.7e-28 131.7 334 29.3
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.1e-20 103.6 78 64.1
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 5.8e-16 90.1 65 69.2
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.4e-14 85.5 45 88.9
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 3.2e-14 84.3 72 62.5
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 5.1e-12 77.0 38 92.1
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 6.2e-10 70.1 64 59.4
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 6.2e-10 70.1 44 65.9
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.5e-08 65.5 58 50.0
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.0e-07 60.5 80 47.5


User provided reference genes

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