Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-136 489.6 244 100.0
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 9.0e-91 337.4 225 80.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.0e-70 270.8 196 76.0
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.7e-70 268.1 202 74.3
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.7e-68 263.5 193 75.1
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 2.4e-67 259.6 190 74.7
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 7.0e-67 258.1 201 72.6
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 3.2e-64 249.2 205 67.8
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 7.2e-64 248.1 226 63.7
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 3.9e-62 242.3 206 65.5
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 6.3e-60 235.0 190 68.4
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.9e-56 223.4 233 57.5
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 5.5e-56 221.9 209 59.8
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.2e-55 220.7 230 54.8
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 3.6e-55 219.2 207 60.4
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 3.6e-55 219.2 203 60.1
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 3.6e-55 219.2 208 59.1
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.0e-55 218.0 193 62.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 8.0e-55 218.0 193 62.2
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.0e-54 217.6 187 62.0
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 1.4e-54 217.2 187 63.6
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.3e-54 216.5 208 61.5
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 3.0e-54 216.1 208 61.1
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 8.8e-54 214.5 224 54.5
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.2e-53 214.2 185 62.7
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 1.5e-53 213.8 238 52.5
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 2.0e-53 213.4 238 52.5
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.6e-53 213.0 230 56.5
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 2.6e-53 213.0 198 59.6
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 3.3e-53 212.6 209 56.5
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 3.3e-53 212.6 193 59.6
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 4.4e-53 212.2 205 57.6
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 5.7e-53 211.8 238 53.8
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.3e-52 210.7 195 61.0
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.7e-52 210.3 209 55.0
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.7e-52 210.3 187 61.0
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.7e-52 210.3 209 54.1
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 2.2e-52 209.9 191 58.6
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 2.2e-52 209.9 190 60.5
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.8e-52 209.5 187 62.0
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.8e-52 209.5 187 62.0
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.8e-52 209.5 188 59.0
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.8e-52 209.5 205 58.0
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.8e-52 209.5 200 58.0
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 3.7e-52 209.1 187 61.0
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 3.7e-52 209.1 206 57.3
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 3.7e-52 209.1 210 57.1
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 4.8e-52 208.8 186 61.8
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 6.3e-52 208.4 209 54.1
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 8.2e-52 208.0 184 61.4
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.1e-51 207.6 186 60.8
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 1.1e-51 207.6 183 61.2
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 1.4e-51 207.2 184 61.4
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.4e-51 207.2 184 60.9
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 3.1e-51 206.1 184 62.0
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 5.3e-51 205.3 228 53.1
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 7.0e-51 204.9 184 60.9
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 7.0e-51 204.9 187 61.0
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 7.0e-51 204.9 234 51.7
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.2e-50 204.1 225 53.8
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.2e-50 204.1 194 57.2
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 2.7e-50 203.0 183 59.6
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 2.7e-50 203.0 193 57.5
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 2.7e-50 203.0 199 55.3
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 2.7e-50 203.0 200 56.0
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 5.9e-50 201.8 186 58.6
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.2e-49 199.9 189 59.8
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 2.9e-49 199.5 206 53.9
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 2.9e-49 199.5 191 56.5
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 3.8e-49 199.1 186 55.9
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 6.5e-49 198.4 240 49.2
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 8.5e-49 198.0 190 57.4
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 8.5e-49 198.0 183 58.5
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.1e-48 197.6 186 58.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.1e-48 197.6 210 51.9
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.5e-48 197.2 209 52.2
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 3.2e-48 196.1 205 53.7
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 5.5e-48 195.3 183 56.8
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 5.5e-48 195.3 185 58.4
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 1.6e-47 193.7 199 55.3
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 2.7e-47 193.0 225 52.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 2.7e-47 193.0 226 51.8
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 3.6e-47 192.6 199 54.3
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.7e-47 192.2 183 56.3
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 6.1e-47 191.8 192 52.6
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 6.1e-47 191.8 187 55.1
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 8.0e-47 191.4 184 54.9
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 8.0e-47 191.4 226 50.9
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.0e-46 191.0 232 50.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.4e-46 190.7 199 52.8
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.8e-46 190.3 186 54.8
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 3.0e-46 189.5 186 54.8
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 3.0e-46 189.5 186 54.8
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.2e-45 187.6 221 48.4
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.2e-45 187.6 186 57.0
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.3e-44 184.1 221 47.5
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.0e-42 176.8 233 48.1
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 5.9e-42 175.3 185 51.9
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 7.7e-42 174.9 215 53.5
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 4.2e-40 169.1 188 52.7
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 2.3e-38 163.3 186 48.4
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.5e-37 160.6 186 47.3
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.0e-37 160.2 186 48.4
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 5.7e-37 158.7 180 47.8
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.7e-36 157.1 186 46.8
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 8.6e-33 144.8 197 46.2
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.1e-32 144.4 199 40.2
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.5e-32 143.3 183 45.9
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.3e-32 141.7 225 36.4
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 7.3e-32 141.7 184 45.7
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 4.7e-31 139.0 228 41.2
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.8e-30 135.2 138 58.0
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 2.0e-29 133.7 76 88.2
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 3.4e-29 132.9 226 35.0
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 5.8e-29 132.1 200 40.0
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.4e-27 127.5 209 41.1
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 1.0e-25 121.3 80 76.2
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.3e-25 120.9 93 63.4
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 7.3e-24 115.2 74 74.3
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 3.6e-23 112.8 127 53.5
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 8.0e-23 111.7 170 38.8
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-19 100.9 80 71.2
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.4e-19 100.1 85 60.0
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 4.6e-18 95.9 56 82.1
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 6.6e-17 92.0 66 66.7
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.8e-15 86.7 55 72.7
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 3.6e-15 86.3 74 55.4
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 4.7e-15 85.9 77 51.9
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 7.1e-11 72.0 60 61.7
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 1.5e-08 64.3 48 54.2
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 2.1e-07 60.5 110 37.3
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.8e-06 55.5 35 77.1


User provided reference genes

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