Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.5e-66 255.0 188 100.0
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 1.3e-57 226.9 235 78.7
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-57 226.9 235 78.7
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.9e-57 225.7 235 78.7
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.6e-56 221.5 238 77.3
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 5.6e-56 221.5 234 77.4
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.6e-47 193.4 157 98.1
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 1.7e-44 183.3 158 94.3
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 1.7e-44 183.3 240 69.2
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 7.0e-43 177.9 158 91.8
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 9.2e-43 177.6 158 91.8
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 9.2e-43 177.6 158 91.8
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 9.2e-43 177.6 158 91.1
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 9.2e-43 177.6 232 68.1
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.2e-42 177.2 157 91.7
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 2.7e-42 176.0 158 91.8
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 3.5e-42 175.6 158 91.1
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 3.5e-42 175.6 155 92.9
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 4.6e-42 175.3 158 91.1
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 1.0e-41 174.1 158 91.1
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.7e-41 173.3 157 88.5
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 1.7e-41 173.3 158 89.9
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.7e-41 173.3 158 89.9
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 6.6e-41 171.4 158 89.9
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 8.6e-41 171.0 158 89.2
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 8.6e-41 171.0 158 89.2
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 1.5e-40 170.2 158 89.2
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 1.9e-40 169.9 170 84.7
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 3.3e-40 169.1 158 88.6
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 3.3e-40 169.1 158 88.6
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 4.3e-40 168.7 158 88.0
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 4.3e-40 168.7 158 88.0
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 5.6e-40 168.3 158 88.0
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 5.6e-40 168.3 158 88.6
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 5.6e-40 168.3 158 88.0
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 9.5e-40 167.5 158 88.0
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.2e-39 167.2 158 88.0
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 1.2e-39 167.2 158 88.0
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 1.6e-39 166.8 158 86.7
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 2.1e-39 166.4 166 83.1
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 2.1e-39 166.4 166 83.1
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 2.1e-39 166.4 158 88.0
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 2.1e-39 166.4 158 88.0
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 2.8e-39 166.0 158 87.3
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 2.8e-39 166.0 158 88.6
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.8e-39 166.0 156 87.8
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 3.6e-39 165.6 158 87.3
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 3.6e-39 165.6 169 84.0
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 4.7e-39 165.2 167 84.4
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 6.2e-39 164.9 157 86.6
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 6.2e-39 164.9 158 88.6
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 6.2e-39 164.9 157 86.0
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.1e-39 164.5 158 86.7
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 8.1e-39 164.5 158 86.1
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-38 164.1 158 86.7
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.1e-38 164.1 158 86.1
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 1.4e-38 163.7 158 87.3
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.8e-38 163.3 200 75.0
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 1.8e-38 163.3 158 86.7
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 2.3e-38 162.9 158 87.3
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 2.3e-38 162.9 169 68.0
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 2.3e-38 162.9 158 86.1
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 2.3e-38 162.9 158 88.0
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 2.3e-38 162.9 167 82.0
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 2.3e-38 162.9 158 86.1
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 2.3e-38 162.9 158 85.4
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 3.1e-38 162.5 158 87.3
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 3.1e-38 162.5 158 88.0
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 4.0e-38 162.2 166 81.3
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 4.0e-38 162.2 169 83.4
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 5.2e-38 161.8 158 84.2
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 6.8e-38 161.4 169 83.4
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 6.8e-38 161.4 169 83.4
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 6.8e-38 161.4 169 83.4
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 6.8e-38 161.4 169 83.4
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 6.8e-38 161.4 169 83.4
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 6.8e-38 161.4 158 55.1
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 6.8e-38 161.4 169 82.2
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 8.9e-38 161.0 169 82.2
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 8.9e-38 161.0 166 81.9
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.2e-37 160.6 157 86.0
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 2.6e-37 159.5 170 81.2
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 2.6e-37 159.5 169 82.2
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 2.6e-37 159.5 166 81.9
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 3.4e-37 159.1 166 82.5
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.4e-37 159.1 158 82.9
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 4.4e-37 158.7 182 61.5
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 7.5e-37 157.9 155 86.5
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 9.9e-37 157.5 158 67.1
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.3e-36 157.1 158 85.4
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.3e-36 157.1 157 86.6
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 1.7e-36 156.8 158 85.4
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 2.2e-36 156.4 157 84.1
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 2.2e-36 156.4 157 86.0
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 4.9e-36 155.2 158 84.8
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 8.3e-36 154.5 158 83.5
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 1.4e-35 153.7 158 84.2
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.4e-35 153.7 169 80.5
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 3.2e-35 152.5 157 84.7
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 9.2e-35 151.0 158 83.5
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.6e-34 150.2 158 82.9
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 1.6e-34 150.2 156 80.8
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.7e-34 149.4 158 82.3
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 4.6e-34 148.7 79 92.4
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.3e-33 147.1 106 73.6
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.3e-33 147.1 106 73.6
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.0e-33 146.0 158 51.9
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 1.5e-32 143.7 79 86.1
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.9e-32 143.3 143 88.8
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 2.5e-32 142.9 156 80.1
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 1.4e-30 137.1 158 63.3
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.8e-30 134.8 79 81.0
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.8e-30 134.8 79 81.0
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.8e-30 134.8 79 81.0
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.8e-30 134.8 79 81.0
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 1.2e-29 134.0 78 79.5
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.6e-29 132.9 96 69.8
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.4e-29 132.1 79 78.5
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 4.4e-29 132.1 157 71.3
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.6e-29 131.3 158 52.5
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 9.9e-29 131.0 79 78.5
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 9.9e-29 131.0 158 76.6
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-28 130.6 79 78.5
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 2.2e-28 129.8 76 80.3
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 1.9e-27 126.7 72 80.6
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-25 119.8 158 50.6
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 6.4e-20 101.7 65 72.3
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 3.9e-17 92.4 158 69.0
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 3.1e-14 82.8 110 85.5
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 4.6e-10 68.9 157 40.8
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-07 60.8 31 100.0
FAN15G0173 Fragaria x ananassa HOM05D008624 ORTHO05D007117 1.3e-07 60.8 31 100.0


User provided reference genes

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