Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1404.4 728 100.0
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1366.7 729 97.8
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1126.3 751 82.2
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1098.2 743 80.9
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-310 1069.3 718 80.8
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.8e-262 908.3 729 70.9
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.8e-251 872.8 732 69.1
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 2.1e-220 769.6 768 60.8
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 7.6e-210 734.6 519 77.8
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.4e-208 729.6 517 77.8
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.7e-206 723.4 705 63.4
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.6e-159 567.4 359 86.6
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 3.1e-78 297.4 532 43.2
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.1e-62 244.2 759 34.9
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 6.5e-60 236.5 759 34.1
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 6.7e-57 226.5 761 34.0
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 8.2e-55 219.5 765 32.4
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 5.3e-54 216.9 820 30.6
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 7.2e-51 206.5 496 38.7
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 8.8e-49 199.5 474 37.8
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.2e-45 189.1 758 31.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 3.8e-44 184.1 471 36.9
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.5e-44 183.0 431 35.0
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 4.2e-43 180.6 797 29.5
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.6e-42 178.7 773 29.1
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 2.1e-42 178.3 375 38.9
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 7.9e-42 176.4 391 37.6
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.4e-41 175.6 619 31.5
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 3.9e-41 174.1 758 29.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 4.8e-39 167.2 407 35.1
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 4.8e-39 167.2 445 34.6
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.2e-39 166.4 414 35.3
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.1e-38 166.0 767 30.2
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.4e-38 164.9 752 29.7
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 4.1e-38 164.1 596 31.2
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 9.1e-38 162.9 355 39.7
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 9.1e-38 162.9 394 35.8
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.2e-37 162.5 829 29.6
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 2.6e-37 161.4 457 32.6
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 3.5e-37 161.0 468 34.2
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 5.9e-37 160.2 577 32.4
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 3.8e-36 157.5 463 33.5
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 5.0e-36 157.1 411 35.8
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 8.5e-36 156.4 782 27.7
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 2.5e-35 154.8 452 32.5
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 5.5e-35 153.7 826 28.5
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 9.4e-35 152.9 481 32.4
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.2e-34 152.5 535 31.6
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 8.0e-34 149.8 704 28.0
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.4e-33 149.1 775 26.7
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 3.9e-33 147.5 765 26.8
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.3e-31 142.5 366 36.6
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.2e-31 141.7 364 37.1
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 3.1e-30 137.9 678 29.2
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.6e-29 134.8 749 27.6
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 4.5e-29 134.0 396 32.3
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 4.5e-29 134.0 458 31.2
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 5.9e-29 133.7 732 28.7
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.0e-28 130.6 526 29.8
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 8.5e-28 129.8 714 27.0
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.1e-27 129.4 329 34.3
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.5e-27 129.0 586 28.3
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 4.2e-27 127.5 429 33.6
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 7.2e-27 126.7 273 38.8
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.1e-26 125.2 419 32.5
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.8e-25 122.1 710 27.3
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 5.2e-25 120.6 731 27.1
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 8.8e-25 119.8 738 26.8
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.2e-24 119.4 472 29.7
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 9.7e-24 116.3 269 38.3
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.7e-23 115.5 389 30.3
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 2.8e-23 114.8 761 26.7
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 3.7e-23 114.4 510 28.2
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 3.7e-23 114.4 510 28.2
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 4.8e-23 114.0 418 30.1
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 4.8e-23 114.0 796 25.0
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.3e-23 113.6 515 29.1
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 8.3e-23 113.2 701 27.5
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.8e-22 112.1 166 45.8
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.8e-22 112.1 558 27.1
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 3.1e-22 111.3 466 28.8
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 4.1e-22 110.9 408 29.9
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 9.1e-22 109.8 724 25.7
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-21 109.4 509 27.3
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.2e-21 109.4 435 31.7
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.2e-21 109.4 196 39.8
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.6e-21 109.0 440 29.8
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.5e-21 107.8 230 39.1
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 3.5e-21 107.8 371 33.4
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 4.5e-21 107.5 520 28.7
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 4.5e-21 107.5 540 30.0
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 4.5e-21 107.5 451 30.8
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 7.7e-21 106.7 385 31.4
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.0e-20 106.3 446 29.8
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 1.3e-20 105.9 205 41.0
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 5.0e-20 104.0 494 28.9
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 8.5e-20 103.2 452 29.6
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.1e-19 102.8 446 27.8
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.9e-19 102.1 720 26.7
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.6e-18 99.0 717 26.9
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.1e-18 98.6 688 26.5
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 8.0e-18 96.7 718 25.5
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.0e-17 96.3 194 40.2
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.8e-17 95.5 432 28.9
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 2.3e-17 95.1 541 27.9
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 4.0e-17 94.4 430 27.7
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 4.0e-17 94.4 382 31.9
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 8.8e-17 93.2 398 30.2
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.5e-16 92.4 490 27.6
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.5e-16 92.4 653 27.0
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.6e-16 91.7 413 27.8
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 3.4e-16 91.3 500 27.6
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.4e-16 91.3 642 25.1
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.4e-16 91.3 521 28.2
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 4.4e-16 90.9 497 28.0
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.7e-15 89.0 357 26.1
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.8e-15 88.2 409 29.8
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 4.8e-15 87.4 487 27.3
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 8.3e-15 86.7 251 35.1
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.1e-14 86.3 724 25.1
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-14 86.3 474 27.0
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 1.2e-13 82.8 272 32.0
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.5e-13 81.3 682 25.7
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 3.5e-13 81.3 212 34.4
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 4.5e-13 80.9 408 27.9
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.9e-13 80.5 81 56.8
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 7.7e-13 80.1 488 27.3
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 7.7e-13 80.1 388 28.9
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.3e-12 79.3 350 27.7
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 1.7e-12 79.0 238 33.6
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 1.7e-12 79.0 323 31.6
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 1.1e-11 76.3 304 31.9
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.9e-11 75.5 496 25.6
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 3.6e-10 71.2 305 30.5
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 4.7e-10 70.9 199 35.7
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 6.1e-10 70.5 367 27.0
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 8.0e-10 70.1 199 35.7
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.8e-09 68.9 98 42.9
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 1.8e-09 68.9 98 42.9
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 2.3e-09 68.6 96 42.7
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 2.3e-09 68.6 96 42.7
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 5.2e-09 67.4 96 41.7
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 5.2e-09 67.4 144 37.5
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.2e-08 66.2 162 41.4
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.2e-08 66.2 305 30.5
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.0e-08 65.5 204 32.4
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 2.6e-08 65.1 144 36.8
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 5.7e-08 63.9 175 31.4
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 7.5e-08 63.5 124 39.5
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 7.5e-08 63.5 175 31.4
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 9.8e-08 63.2 257 30.7
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 9.8e-08 63.2 171 33.9
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.3e-07 62.8 107 42.1
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.2e-07 62.0 116 39.7
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 2.2e-07 62.0 111 45.0
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 2.2e-07 62.0 696 23.6
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 3.7e-07 61.2 196 33.7
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 4.9e-07 60.8 111 36.9
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 6.3e-07 60.5 143 32.9
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 8.3e-07 60.1 180 31.1
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 1.1e-06 59.7 100 39.0
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 1.4e-06 59.3 204 32.8
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 1.8e-06 58.9 88 44.3
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 2.4e-06 58.5 111 36.9
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 3.1e-06 58.2 196 28.1
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 4.1e-06 57.8 232 29.3
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 4.1e-06 57.8 160 31.9
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 5.4e-06 57.4 242 28.1
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 7.0e-06 57.0 90 35.6


User provided reference genes

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