Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0309 Fragaria x ananassa HOM05D004807 ORTHO05D005915 2.9e-113 411.8 188 100.0
RcHm_v2.0_Chr3g0478641 Rosa chinensis HOM05D004807 ORTHO05D005915 4.3e-24 115.5 164 42.7
FAN05G1427 Fragaria x ananassa HOM05D004807 ORTHO05D005915 2.1e-23 113.2 164 43.3
FAN05G3467 Fragaria x ananassa HOM05D004807 ORTHO05D005915 2.1e-23 113.2 164 43.3
FAN02G2347 Fragaria x ananassa HOM05D004807 ORTHO05D005915 6.2e-23 111.7 164 42.7
FvH4_6g21460 Fragaria vesca HOM05D004807 ORTHO05D005915 1.4e-22 110.5 164 42.7
FAN14G4845 Fragaria x ananassa HOM05D004807 ORTHO05D005915 1.4e-22 110.5 164 42.7
FAN09G2962 Fragaria x ananassa HOM05D004807 ORTHO05D005915 1.5e-21 107.1 164 42.1
FAN14G5853 Fragaria x ananassa HOM05D004807 ORTHO05D005915 1.7e-20 103.6 145 43.4
Prupe.7G085900 Prunus persica HOM05D004807 ORTHO05D005915 1.2e-18 97.4 198 35.9
MD14G1049600 Malus domestica HOM05D004807 ORTHO05D005915 4.3e-16 89.0 153 37.9
FAN14G3304 Fragaria x ananassa HOM05D063155 ORTHO05D045764 1.3e-15 87.4 113 45.1
QL07p025555 Quercus lobata HOM05D004807 ORTHO05D005915 1.7e-12 77.0 85 44.7
CiPaw.09G026200 Carya illinoinensis HOM05D004807 ORTHO05D005915 1.6e-10 70.5 85 43.5
Sed0007842 Sechium edule HOM05D004807 ORTHO05D005915 1.6e-10 70.5 85 42.4
Haze_20076 Corylus avellana HOM05D004807 ORTHO05D005915 1.8e-09 67.0 85 40.0
Glyma.19G204200 Glycine max HOM05D004807 ORTHO05D005915 2.3e-09 66.6 85 42.4
BcaB06g25560 Brassica carinata HOM05D004807 ORTHO05D005915 3.0e-09 66.2 71 40.8
FvH4_4g14010 Fragaria vesca HOM05D004807 ORTHO05D005915 6.7e-09 65.1 40 70.0
Rhsim03G0002200 Rhododendron simsii HOM05D004807 ORTHO05D005915 1.5e-08 63.9 65 49.2
Rhsim03G0002400 Rhododendron simsii HOM05D004807 ORTHO05D005915 1.5e-08 63.9 65 49.2
arahy.Tifrunner.gnm1.ann1.14IR3Z Arachis hypogaea HOM05D004807 ORTHO05D005915 1.9e-08 63.5 85 36.5
arahy.Tifrunner.gnm1.ann1.4PIV4R Arachis hypogaea HOM05D004807 ORTHO05D005915 1.9e-08 63.5 85 36.5
Phvul.001G200200 Phaseolus vulgaris HOM05D004807 ORTHO05D005915 1.9e-08 63.5 85 40.0
GSVIVG01033428001 Vitis vinifera HOM05D004807 ORTHO05D005915 1.9e-08 63.5 87 39.1
Sp3g10180 Schrenkiella parvula HOM05D004807 ORTHO05D005915 2.5e-08 63.2 71 38.0
THA.LOC104826780 Tarenaya hassleriana HOM05D004807 ORTHO05D005915 2.5e-08 63.2 85 36.5
CSS0045552 Camellia sinensis var. sinensis HOM05D004807 ORTHO05D005915 5.6e-08 62.0 55 50.9
TAR623G0137 Trochodendron aralioides HOM05D004807 ORTHO05D005915 5.6e-08 62.0 56 51.8
VMungo1383G3705 Vigna mungo HOM05D004807 ORTHO05D005915 5.6e-08 62.0 65 47.7
C03p45390 Brassica napus HOM05D004807 ORTHO05D005915 7.4e-08 61.6 71 36.6
BolC3t16806H Brassica oleracea HOM05D004807 ORTHO05D005915 7.4e-08 61.6 71 36.6
Ciclev10011020m.g Citrus clementina HOM05D004807 ORTHO05D005915 7.4e-08 61.6 56 51.8
Glyma.03G206600 Glycine max HOM05D004807 ORTHO05D005915 7.4e-08 61.6 85 40.0
BcaB04g18703 Brassica carinata HOM05D004807 ORTHO05D005915 9.6e-08 61.2 71 36.6
TWI74G1245 Tripterygium wilfordii HOM05D004807 ORTHO05D005915 9.6e-08 61.2 56 50.0
CARHR086510 Cardamine hirsuta HOM05D004807 ORTHO05D005915 1.3e-07 60.8 71 38.0
A03p37390 Brassica napus HOM05D004807 ORTHO05D005915 1.6e-07 60.5 71 36.6
C05p55980 Brassica napus HOM05D004807 ORTHO05D005915 1.6e-07 60.5 71 38.0
BraA03t12900Z Brassica rapa HOM05D004807 ORTHO05D005915 1.6e-07 60.5 71 36.6
Thhalv10019900m.g Eutrema salsugineum HOM05D004807 ORTHO05D005915 1.6e-07 60.5 71 38.0
ClCG10G017810 Citrullus lanatus HOM05D004807 ORTHO05D005915 2.1e-07 60.1 65 46.2
Atru.chr8.1221 Acer truncatum HOM05D004807 ORTHO05D005915 2.8e-07 59.7 72 43.1
BcaC01g04068 Brassica carinata HOM05D004807 ORTHO05D005915 2.8e-07 59.7 71 35.2
MELO3C009593.2 Cucumis melo HOM05D004807 ORTHO05D005915 2.8e-07 59.7 56 50.0
DCAR_017047 Daucus carota HOM05D004807 ORTHO05D005915 2.8e-07 59.7 85 35.3
AL3G23560 Arabidopsis lyrata HOM05D004807 ORTHO05D005915 3.7e-07 59.3 71 36.6
BcaC05g29309 Brassica carinata HOM05D004807 ORTHO05D005915 3.7e-07 59.3 71 38.0
BolC5t34266H Brassica oleracea HOM05D004807 ORTHO05D005915 3.7e-07 59.3 71 38.0
CAN.G128.57 Capsicum annuum HOM05D004807 ORTHO05D005915 3.7e-07 59.3 68 44.1
CsaV3_3G038490 Cucumis sativus L. HOM05D004807 ORTHO05D005915 3.7e-07 59.3 56 50.0
ECA238G3196 Erigeron canadensis HOM05D004807 ORTHO05D005915 3.7e-07 59.3 65 44.6
A05p37420 Brassica napus HOM05D004807 ORTHO05D005915 4.8e-07 58.9 71 36.6
BraA05t22540Z Brassica rapa HOM05D004807 ORTHO05D005915 4.8e-07 58.9 71 36.6
Lalb_Chr25g0287671 Lupinus albus HOM05D004807 ORTHO05D005915 4.8e-07 58.9 71 42.3
Dinv25023 Davidia involucrata HOM05D004807 ORTHO05D005915 6.2e-07 58.5 55 50.9
Lj1g0016427 Lotus japonicus HOM05D004807 ORTHO05D005915 6.2e-07 58.5 69 40.6
AT3G11960 Arabidopsis thaliana HOM05D004807 ORTHO05D005915 8.1e-07 58.2 71 36.6
Manes.08G040000 Manihot esculenta HOM05D004807 ORTHO05D005915 8.1e-07 58.2 56 46.4
Oeu046734.3 Olea europaea HOM05D004807 ORTHO05D005915 8.1e-07 58.2 68 41.2
CsaV3_7G005530 Cucumis sativus L. HOM05D004807 ORTHO05D005915 1.1e-06 57.8 55 50.9
Nn7g35896 Nelumbo nucifera HOM05D004807 ORTHO05D005915 1.1e-06 57.8 52 50.0
Ca_09097_v3 Cicer arietinum L. HOM05D004807 ORTHO05D005915 1.8e-06 57.0 69 39.1
vmacro12557 Vaccinium macrocarpon HOM05D004807 ORTHO05D005915 1.8e-06 57.0 65 46.2
Aa31LG3G5560 Aethionema arabicum HOM05D004807 ORTHO05D005915 2.4e-06 56.6 66 40.9
CANSAT64G1965 Cannabis sativa HOM05D004807 ORTHO05D005915 2.4e-06 56.6 40 57.5
Eucgr.K01882 Eucalyptus grandis HOM05D004807 ORTHO05D005915 2.4e-06 56.6 52 48.1
SalBow6G5976 Salvia bowleyana HOM05D004807 ORTHO05D005915 3.1e-06 56.2 68 38.2
Carub.0003s1129 Capsella rubella HOM05D004807 ORTHO05D005915 4.0e-06 55.8 52 42.3
Sabra06G0151700 Salix brachista HOM05D004807 ORTHO05D005915 4.0e-06 55.8 85 35.3
Actinidia22073 Actinidia chinensis HOM05D004807 ORTHO05D005915 5.3e-06 55.5 54 51.9
SGA_v2.0_scaffold105G30514 Striga asiatica HOM05D004807 ORTHO05D005915 5.3e-06 55.5 65 36.9
Solyc10g080630.2 Solanum lycopersicum HOM05D004807 ORTHO05D005915 6.9e-06 55.1 68 41.2
MSTRG.19928 Avicennia marina HOM05D004807 ORTHO05D005915 9.0e-06 54.7 54 42.6
Potri.006G197200 Populus trichocarpa HOM05D004807 ORTHO05D005915 9.0e-06 54.7 85 34.1


User provided reference genes

Program Settings