Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0258 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.1e-42 175.3 87 100.0
FAN10G2372 Fragaria x ananassa HOM05D006953 ORTHO05D008556 7.8e-29 130.2 66 97.0
FAN01G1395 Fragaria x ananassa HOM05D006953 ORTHO05D008556 7.1e-14 80.5 38 100.0
FAN01G2049 Fragaria x ananassa HOM05D006953 ORTHO05D008556 7.1e-14 80.5 38 100.0
FAN06G2124 Fragaria x ananassa HOM05D006953 ORTHO05D008556 7.1e-14 80.5 38 100.0
FAN06G2412 Fragaria x ananassa HOM05D006953 ORTHO05D008556 7.1e-14 80.5 38 100.0
RcHm_v2.0_Chr1g0366451 Rosa chinensis HOM05D006953 ORTHO05D008556 5.1e-12 74.3 38 92.1
PGR142G3972 Punica granatum HOM05D006953 ORTHO05D008556 2.1e-10 68.9 38 84.2
MD07G1195400 Malus domestica HOM05D006953 ORTHO05D008556 6.2e-10 67.4 38 81.6
COL.COLO4_14982 Corchorus olitorius HOM05D006953 ORTHO05D008556 2.4e-09 65.5 38 78.9
Duzib114G0949 Durio zibethinus HOM05D006953 ORTHO05D008556 3.1e-09 65.1 38 78.9
Eucgr.K03148 Eucalyptus grandis HOM05D006953 ORTHO05D008556 3.1e-09 65.1 38 78.9
Gohir.A10G216201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 3.1e-09 65.1 58 58.6
vmacro20134 Vaccinium macrocarpon HOM05D006953 ORTHO05D008556 3.1e-09 65.1 40 72.5
Duzib106G0684 Durio zibethinus HOM05D006953 ORTHO05D008556 4.0e-09 64.7 38 78.9
Gohir.A13G019700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 4.0e-09 64.7 38 78.9
Gohir.D10G225201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 4.0e-09 64.7 58 58.6
Gohir.D13G020300 Gossypium hirsutum HOM05D006953 ORTHO05D008556 4.0e-09 64.7 38 78.9
CAN.G97.41 Capsicum annuum HOM05D006953 ORTHO05D008556 5.3e-09 64.3 48 60.4
Gorai.011G256200 Gossypium raimondii HOM05D006953 ORTHO05D008556 5.3e-09 64.3 58 58.6
Thecc.10G046100 Theobroma cacao HOM05D006953 ORTHO05D008556 6.9e-09 63.9 38 76.3
MELO3C030371.2 Cucumis melo HOM05D006953 ORTHO05D008556 9.0e-09 63.5 74 45.9
Migut.A00495 Erythranthe guttata HOM05D006953 ORTHO05D008556 9.0e-09 63.5 38 76.3
THA.LOC104799351 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 9.0e-09 63.5 38 76.3
Thecc.05G042200 Theobroma cacao HOM05D006953 ORTHO05D008556 9.0e-09 63.5 38 76.3
Actinidia13138 Actinidia chinensis HOM05D006953 ORTHO05D008556 1.2e-08 63.2 51 64.7
Cc06_g02830 Coffea canephora HOM05D006953 ORTHO05D008556 1.2e-08 63.2 38 76.3
Duzib128G1377 Durio zibethinus HOM05D006953 ORTHO05D008556 1.2e-08 63.2 38 76.3
Medtr7g099720 Medicago truncatula HOM05D006953 ORTHO05D008556 1.2e-08 63.2 38 76.3
PSO339G5949 Papaver somniferum HOM05D006953 ORTHO05D008556 1.2e-08 63.2 38 78.9
TWI74G1054 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.2e-08 63.2 38 76.3
PSO801G0549 Papaver somniferum HOM05D006953 ORTHO05D008556 1.5e-08 62.8 38 78.9
TWI53G1308 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.5e-08 62.8 38 76.3
GSVIVG01034200001 Vitis vinifera HOM05D006953 ORTHO05D008556 2.0e-08 62.4 41 70.7
Aa31LG3G80 Aethionema arabicum HOM05D006953 ORTHO05D008556 2.6e-08 62.0 38 76.3
Prupe.6G252200 Prunus persica HOM05D006953 ORTHO05D008556 2.6e-08 62.0 38 73.7
AL3G24240 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 76.3
AT3G12587 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 76.3
Carub.0003s1193 Capsella rubella HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 76.3
Gohir.A09G157400 Gossypium hirsutum HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 73.7
Gohir.D09G152700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 73.7
Gorai.006G174200 Gossypium raimondii HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 73.7
Manes.08G128230 Manihot esculenta HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 73.7
Manes.10G032302 Manihot esculenta HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 73.7
Potri.008G053200 Populus trichocarpa HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 73.7
Potri.010G207100 Populus trichocarpa HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 73.7
PGR044G1841 Punica granatum HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 73.7
Hund17592 Selenicereus undatus HOM05D006953 ORTHO05D008556 3.4e-08 61.6 38 73.7
Actinidia02894 Actinidia chinensis HOM05D005343 ORTHO05D008556 4.4e-08 61.2 42 66.7
CANSAT56G0829 Cannabis sativa HOM05D006953 ORTHO05D008556 5.8e-08 60.8 38 71.1
CANSAT56G2326 Cannabis sativa HOM05D006953 ORTHO05D008556 5.8e-08 60.8 38 71.1
CiPaw.10G144400 Carya illinoinensis HOM05D006953 ORTHO05D008556 5.8e-08 60.8 38 73.7
Duzib106G1537 Durio zibethinus HOM05D006953 ORTHO05D008556 5.8e-08 60.8 38 71.1
MD04G1125200 Malus domestica HOM05D006953 ORTHO05D008556 5.8e-08 60.8 62 48.4
Manes.09G090100 Manihot esculenta HOM05D006953 ORTHO05D008556 5.8e-08 60.8 38 73.7
Ciclev10033290m.g Citrus clementina HOM05D006953 ORTHO05D008556 7.6e-08 60.5 38 71.1
COL.COLO4_14834 Corchorus olitorius HOM05D000248 ORTHO05D000146 7.6e-08 60.5 43 65.1
SGA_v2.0_scaffold27G11723 Striga asiatica HOM05D006953 ORTHO05D008556 7.6e-08 60.5 37 73.0
THA.LOC104816283 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 7.6e-08 60.5 38 71.1
Glyma.03G171300 Glycine max HOM05D006953 ORTHO05D008556 9.9e-08 60.1 38 71.1
Glyma.19G172400 Glycine max HOM05D006953 ORTHO05D008556 9.9e-08 60.1 38 71.1
Nn1g01406 Nelumbo nucifera HOM05D006953 ORTHO05D008556 9.9e-08 60.1 38 73.7
Os07g0620500 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 9.9e-08 60.1 38 71.1
Phvul.005G001900 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 9.9e-08 60.1 38 71.1
FAN09G0966 Fragaria x ananassa HOM05D006953 ORTHO05D008556 1.3e-07 59.7 41 63.4
Nn6g34196 Nelumbo nucifera HOM05D006953 ORTHO05D008556 1.3e-07 59.7 38 71.1
Potri.008G053300 Populus trichocarpa HOM05D006953 ORTHO05D008556 1.3e-07 59.7 38 71.1
CSS0025790 Camellia sinensis var. sinensis HOM05D006953 ORTHO05D008556 1.7e-07 59.3 38 73.7
CARHR087090 Cardamine hirsuta HOM05D006953 ORTHO05D008556 1.7e-07 59.3 35 80.0
Thhalv10021851m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 3.8e-07 58.2 38 71.1
PSO384G5050 Papaver somniferum HOM05D006953 ORTHO05D008556 3.8e-07 58.2 38 71.1
Phvul.006G203200 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 3.8e-07 58.2 38 73.7
Glyma.13G258200 Glycine max HOM05D006953 ORTHO05D008556 4.9e-07 57.8 38 73.7
Glyma.15G057100 Glycine max HOM05D006953 ORTHO05D008556 4.9e-07 57.8 35 74.3
MD01G1125600 Malus domestica HOM05D006953 ORTHO05D008556 4.9e-07 57.8 38 71.1
ECA236G4263 Erigeron canadensis HOM05D006953 ORTHO05D008556 8.4e-07 57.0 38 68.4
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 1.1e-06 56.6 38 71.1
BNapus_Darmor_BZH_scaffold_149p00110 Brassica napus HOM05D006953 ORTHO05D008556 1.1e-06 56.6 38 71.1
C01p52590 Brassica napus HOM05D006953 ORTHO05D008556 1.1e-06 56.6 38 71.1
BolC1t05198H Brassica oleracea HOM05D006953 ORTHO05D008556 1.1e-06 56.6 38 71.1
BraA01t04125Z Brassica rapa HOM05D006953 ORTHO05D008556 1.1e-06 56.6 38 71.1
BraA03t12923Z Brassica rapa HOM05D006953 ORTHO05D008556 1.1e-06 56.6 38 68.4
TWI15G0277 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.1e-06 56.6 38 65.8
BcaC01g04017 Brassica carinata HOM05D006953 ORTHO05D008556 1.4e-06 56.2 38 68.4
BolC3t16848H Brassica oleracea HOM05D006953 ORTHO05D008556 1.4e-06 56.2 38 68.4
BolC9t60140H Brassica oleracea HOM05D006953 ORTHO05D008556 1.9e-06 55.8 40 60.0
FAN14G5692 Fragaria x ananassa HOM05D006953 ORTHO05D008556 1.9e-06 55.8 35 71.4
Nn3g21523 Nelumbo nucifera HOM05D006953 ORTHO05D008556 2.4e-06 55.5 36 61.1
Os03g0392050 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 2.4e-06 55.5 38 65.8
CANSAT35G0750 Cannabis sativa HOM05D006953 ORTHO05D008556 5.4e-06 54.3 38 68.4
BolC5t34201H Brassica oleracea HOM05D006953 ORTHO05D008556 7.1e-06 53.9 38 65.8
Gohir.A01G223600 Gossypium hirsutum HOM05D006953 ORTHO05D008556 7.1e-06 53.9 35 68.6
Gohir.D01G212800 Gossypium hirsutum HOM05D006953 ORTHO05D008556 7.1e-06 53.9 35 68.6
Gorai.002G258800 Gossypium raimondii HOM05D006953 ORTHO05D008556 7.1e-06 53.9 35 68.6
BcaB01g06171 Brassica carinata HOM05D001365 ORTHO05D001291 9.3e-06 53.5 35 65.7
BcaB01g06189 Brassica carinata HOM05D001365 ORTHO05D001291 9.3e-06 53.5 35 65.7
A03p00780 Brassica napus HOM05D006953 ORTHO05D008556 9.3e-06 53.5 35 65.7
C03p01030 Brassica napus HOM05D006953 ORTHO05D008556 9.3e-06 53.5 35 65.7
BolC3t12664H Brassica oleracea HOM05D006953 ORTHO05D008556 9.3e-06 53.5 35 65.7
BraA03t09462Z Brassica rapa HOM05D001365 ORTHO05D001291 9.3e-06 53.5 35 65.7


User provided reference genes

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