Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.6e-283 979.2 658 100.0
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 4.2e-276 954.5 658 95.0
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 8.2e-272 940.3 658 97.7
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.5e-270 936.0 656 95.9
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 3.3e-228 795.4 665 86.3
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 1.1e-170 604.4 677 68.8
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 7.6e-169 598.2 611 74.6
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 3.1e-162 576.2 487 62.4
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 4.3e-156 555.8 478 71.8
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 1.2e-153 547.7 476 71.4
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 4.4e-140 502.7 452 67.9
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 3.2e-135 486.5 649 57.5
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 1.7e-131 474.2 429 57.6
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 2.2e-131 473.8 482 63.1
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.0e-128 464.9 427 66.5
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 1.2e-126 458.0 421 67.0
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 3.6e-126 456.4 469 61.8
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 4.7e-126 456.1 423 65.5
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 6.1e-126 455.7 414 67.4
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 1.8e-125 454.1 461 63.8
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 5.2e-125 452.6 430 67.2
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 2.0e-124 450.7 427 63.7
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 4.4e-124 449.5 416 68.5
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 1.7e-123 447.6 465 62.2
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 1.4e-122 444.5 416 68.3
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 4.1e-122 443.0 437 62.7
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 4.1e-122 443.0 411 67.2
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 5.9e-121 439.1 462 63.4
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 1.3e-120 438.0 447 62.2
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 1.7e-120 437.6 417 66.2
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 2.3e-120 437.2 447 61.1
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 2.3e-120 437.2 462 63.0
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 3.8e-120 436.4 485 58.4
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 5.0e-120 436.0 358 70.9
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 6.6e-120 435.6 409 65.8
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 6.6e-120 435.6 424 65.3
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 8.6e-120 435.3 410 67.8
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 1.5e-119 434.5 428 62.9
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 1.5e-119 434.5 462 62.8
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 1.9e-119 434.1 412 67.7
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 4.3e-119 433.0 430 52.1
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 5.6e-119 432.6 409 64.5
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 7.3e-119 432.2 352 71.3
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 7.3e-119 432.2 404 65.8
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 7.3e-119 432.2 356 72.2
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 4.7e-118 429.5 410 63.2
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 8.0e-118 428.7 467 60.2
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 1.4e-117 427.9 426 62.7
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 4.0e-117 426.4 472 59.1
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 8.9e-117 425.2 472 58.9
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 8.9e-117 425.2 417 61.2
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 4.4e-116 422.9 409 64.8
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 5.7e-116 422.5 424 63.4
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 5.7e-116 422.5 372 69.9
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 9.8e-116 421.8 404 58.9
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 1.3e-115 421.4 453 62.5
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 1.7e-115 421.0 468 59.4
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 1.7e-115 421.0 419 63.0
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 2.2e-115 420.6 431 60.3
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 2.9e-115 420.2 405 64.7
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 2.9e-115 420.2 431 60.3
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 6.4e-115 419.1 423 61.0
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 1.4e-114 417.9 359 70.2
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 7.0e-114 415.6 440 61.1
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 1.2e-113 414.8 392 59.7
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 2.0e-113 414.1 414 63.3
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 4.6e-113 412.9 426 63.8
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 7.8e-113 412.1 434 61.3
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 2.3e-112 410.6 426 61.7
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 2.3e-112 410.6 418 63.2
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 5.0e-112 409.5 327 74.9
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 5.0e-112 409.5 430 51.2
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 6.6e-112 409.1 426 62.9
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 1.9e-111 407.5 408 63.5
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 8.0e-110 402.1 418 61.5
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 8.0e-110 402.1 439 60.1
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 1.0e-109 401.7 356 56.5
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.1e-109 400.2 634 45.9
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.1e-109 400.2 634 45.9
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 3.1e-109 400.2 349 68.2
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 4.0e-109 399.8 362 68.2
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 7.5e-108 395.6 450 56.4
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 6.4e-107 392.5 425 61.9
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 8.3e-107 392.1 425 59.5
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 1.9e-106 391.0 447 58.6
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 4.1e-106 389.8 327 73.7
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 2.7e-105 387.1 461 56.2
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 3.5e-105 386.7 317 71.9
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 5.6e-103 379.4 354 67.2
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 9.5e-103 378.6 354 66.9
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 9.5e-103 378.6 354 66.9
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 1.6e-102 377.9 439 56.7
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 2.8e-102 377.1 354 67.2
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 2.8e-102 377.1 302 76.5
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 1.2e-100 371.7 317 70.3
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 1.5e-100 371.3 344 63.7
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 3.4e-100 370.2 354 66.4
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 2.2e-99 367.5 356 61.8
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 1.9e-95 354.4 434 54.1
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 7.6e-92 342.4 372 59.7
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 4.9e-91 339.7 427 54.1
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 6.9e-69 266.2 453 38.2
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 4.2e-66 256.9 188 63.8
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 6.0e-65 253.1 485 36.5
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 5.3e-53 213.4 286 44.1
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.3e-51 208.8 200 52.5
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 2.3e-40 171.4 364 43.4
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 4.8e-38 163.7 351 36.8
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 3.8e-27 127.5 348 39.9
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 2.1e-25 121.7 203 56.7
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 1.8e-24 118.6 295 29.2
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 7.5e-23 113.2 346 26.3
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.5e-15 89.0 48 79.2
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 2.2e-06 58.5 100 33.0
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 4.9e-06 57.4 146 26.7
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 6.3e-06 57.0 140 28.6


User provided reference genes

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