Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-240 835.5 429 100.0
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 2.3e-190 669.1 353 98.3
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.1e-190 667.9 353 98.0
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.7e-190 667.5 353 98.0
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.7e-190 667.5 353 98.0
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.7e-186 654.1 370 93.2
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 9.1e-179 630.6 353 93.5
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 3.2e-168 595.5 350 87.7
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 9.4e-168 594.0 343 88.9
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 4.1e-163 578.6 350 84.9
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.1e-159 566.2 347 82.1
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 2.6e-157 559.3 558 57.9
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.3e-157 558.9 336 83.3
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.3e-156 557.0 350 80.9
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.7e-156 556.6 347 80.7
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.8e-156 555.8 350 80.9
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 3.7e-156 555.4 343 81.6
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 3.7e-156 555.4 343 81.6
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 3.7e-156 555.4 354 80.5
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 8.2e-156 554.3 343 81.3
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 8.2e-156 554.3 343 81.3
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 8.2e-156 554.3 347 81.0
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 8.2e-156 554.3 326 85.0
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 8.2e-156 554.3 347 80.1
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.1e-155 553.9 350 79.7
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.4e-155 553.5 343 81.3
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.4e-155 553.5 349 81.1
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.4e-155 553.5 337 82.2
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 1.4e-155 553.5 324 85.2
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.4e-155 553.5 374 76.5
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.8e-155 553.1 335 82.4
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.8e-155 553.1 338 81.4
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 2.4e-155 552.7 347 81.3
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 2.4e-155 552.7 332 82.8
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.4e-155 552.7 331 83.4
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 7.0e-155 551.2 347 80.4
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 7.0e-155 551.2 347 80.4
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 7.0e-155 551.2 329 83.3
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 9.1e-155 550.8 349 80.5
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.2e-154 550.4 347 79.3
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 1.2e-154 550.4 355 80.3
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.6e-154 550.1 347 80.4
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.6e-154 550.1 331 83.7
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 2.0e-154 549.7 350 78.9
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.7e-154 549.3 343 81.0
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 3.5e-154 548.9 355 78.6
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.5e-154 548.9 333 81.7
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 3.5e-154 548.9 326 83.7
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 4.5e-154 548.5 350 80.3
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 5.9e-154 548.1 349 79.7
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 5.9e-154 548.1 326 83.7
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 7.7e-154 547.7 331 81.6
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.0e-153 547.4 331 82.8
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.3e-153 547.0 328 82.3
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.3e-153 547.0 334 82.3
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.3e-153 547.0 325 83.7
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 2.2e-153 546.2 337 80.1
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 2.9e-153 545.8 325 83.4
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.8e-153 545.4 330 81.8
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 3.8e-153 545.4 358 77.4
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 5.0e-153 545.0 333 80.2
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 8.5e-153 544.3 331 81.3
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.1e-152 543.9 338 80.5
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.1e-152 543.9 331 81.9
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.5e-152 543.5 349 81.1
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 2.5e-152 542.7 325 82.2
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.5e-152 542.7 330 83.0
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.2e-152 542.3 363 77.7
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 4.2e-152 542.0 352 77.3
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 4.2e-152 542.0 330 80.9
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 4.2e-152 542.0 325 83.4
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 5.5e-152 541.6 327 82.3
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 7.2e-152 541.2 357 78.4
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 9.4e-152 540.8 348 79.0
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.6e-151 540.0 324 83.0
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.7e-151 539.3 347 77.8
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 2.7e-151 539.3 348 78.7
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 3.6e-151 538.9 339 80.8
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 4.7e-151 538.5 341 78.9
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 6.1e-151 538.1 347 77.8
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.4e-150 537.0 330 80.3
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.4e-150 537.0 323 83.6
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 2.3e-150 536.2 328 81.7
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.3e-150 536.2 342 78.9
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 6.8e-150 534.6 330 80.0
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 6.8e-150 534.6 331 81.0
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.5e-149 533.5 330 79.4
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 1.5e-149 533.5 329 81.2
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.3e-148 530.4 339 78.5
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 2.8e-148 529.3 353 75.6
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 4.8e-148 528.5 336 79.5
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 8.3e-148 527.7 376 71.5
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 5.4e-147 525.0 354 76.0
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 7.0e-147 524.6 330 81.8
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 9.1e-147 524.2 333 78.7
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.2e-146 523.9 323 79.3
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.6e-146 523.5 354 76.8
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 4.5e-146 521.9 355 75.2
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 4.2e-144 515.4 330 78.5
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.2e-143 513.8 374 71.9
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 2.1e-143 513.1 380 71.3
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 8.0e-143 511.1 297 85.9
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.8e-142 510.0 349 77.1
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.2e-141 507.3 301 84.1
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 4.9e-140 501.9 411 65.2
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.6e-138 496.9 343 73.5
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 3.9e-137 492.3 338 75.4
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.1e-135 486.5 403 66.5
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 8.0e-135 484.6 326 75.8
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.0e-134 484.2 327 71.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.0e-133 479.9 329 74.8
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 7.5e-133 478.0 286 83.6
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.3e-132 474.6 388 67.5
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.9e-128 463.4 322 71.4
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.0e-126 455.7 329 68.4
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-125 453.0 432 61.6
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 2.9e-124 449.5 324 69.1
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 3.7e-124 449.1 262 85.9
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 4.9e-124 448.7 324 69.8
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.1e-123 447.6 324 69.4
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 9.2e-123 444.5 343 69.1
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 4.6e-122 442.2 309 72.2
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.0e-121 441.0 293 79.9
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 2.1e-119 433.3 320 66.9
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.0e-118 429.1 391 62.4
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.4e-115 419.9 302 69.5
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.6e-114 417.2 322 63.0
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.5e-114 416.0 258 79.8
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 8.6e-113 411.4 332 61.7
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.1e-110 404.4 336 65.2
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 5.2e-110 402.1 252 80.2
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.3e-108 397.5 300 66.7
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 8.4e-108 394.8 248 79.8
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-107 394.0 248 81.5
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.0e-105 386.3 337 62.9
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.3e-104 382.9 274 69.3
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.3e-103 380.9 238 81.5
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 3.6e-103 379.4 240 81.7
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.9e-99 367.1 238 77.3
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.0e-97 361.3 337 55.8
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.5e-96 356.7 356 56.5
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.1e-94 349.7 234 76.1
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 7.4e-88 328.6 200 81.5
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.7e-71 273.1 286 55.6
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 5.3e-70 269.2 203 71.9
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 5.3e-62 242.7 161 73.3
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.2e-60 237.3 373 43.2
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.7e-55 221.1 130 82.3
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.4e-54 217.2 253 53.0
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 3.5e-53 213.4 141 71.6
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 8.5e-52 208.8 352 41.2
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 5.5e-51 206.1 126 80.2
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.7e-47 193.4 99 96.0
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 3.5e-45 186.8 233 41.2
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.0e-44 185.3 136 68.4
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.6e-40 170.6 219 46.6
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.8e-39 167.2 102 73.5
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.8e-36 156.8 104 75.0
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 4.2e-35 153.3 103 68.9
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 4.7e-34 149.8 90 77.8
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.8e-33 147.9 110 72.7
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.3e-33 147.5 96 79.2
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 3.5e-29 133.7 76 85.5
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 5.9e-29 132.9 86 68.6
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.0e-25 120.2 189 46.6
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.1e-22 112.1 93 66.7
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.6e-21 108.2 77 62.3
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.9e-19 101.3 73 76.7
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.3e-19 100.5 72 63.9
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 9.5e-19 99.0 73 57.5
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 3.6e-18 97.1 62 80.6
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 1.0e-17 95.5 58 74.1
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 3.4e-16 90.5 78 69.2
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.9e-06 58.2 45 62.2
FAN07G2189 Fragaria x ananassa HOM05D000862 ORTHO05D000943 4.1e-06 57.0 39 64.1
FvH4_4g19540 Fragaria vesca HOM05D000862 ORTHO05D000943 5.4e-06 56.6 39 61.5
FAN12G0175 Fragaria x ananassa HOM05D000862 ORTHO05D000943 5.4e-06 56.6 39 61.5


User provided reference genes

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