Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0065 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.6e-67 259.2 128 100.0
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 4.1e-18 95.1 65 72.3
FAN10G2215 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.2e-12 77.0 75 56.0
MD07G1267400 Malus domestica HOM05D002077 ORTHO05D000818 1.5e-12 76.6 110 40.0
FvH4_7g29321 Fragaria vesca HOM05D002077 ORTHO05D000818 2.0e-12 76.3 75 57.3
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 1.3e-11 73.6 110 39.1
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 1.1e-10 70.5 71 53.5
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 1.8e-10 69.7 65 55.4
FAN03G1381 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.4e-10 69.3 75 54.7
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.4e-10 69.3 75 54.7
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 2.4e-10 69.3 65 55.4
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 3.1e-10 68.9 65 55.4
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 7.0e-10 67.8 65 56.9
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 7.0e-10 67.8 65 56.9
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 9.1e-10 67.4 65 55.4
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 1.2e-09 67.0 65 58.5
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 1.2e-09 67.0 65 55.4
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.2e-09 67.0 65 55.4
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.2e-09 67.0 65 55.4
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.2e-09 67.0 65 53.8
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 1.2e-09 67.0 65 56.9
CSS0046422 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.6e-09 66.6 65 55.4
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 1.6e-09 66.6 65 55.4
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 1.6e-09 66.6 65 55.4
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 2.0e-09 66.2 88 46.6
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 2.0e-09 66.2 65 52.3
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 2.0e-09 66.2 65 53.8
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 2.0e-09 66.2 65 53.8
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 2.0e-09 66.2 65 53.8
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 2.0e-09 66.2 65 53.8
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 2.0e-09 66.2 65 55.4
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 2.0e-09 66.2 65 55.4
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 2.0e-09 66.2 65 53.8
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 2.7e-09 65.9 65 53.8
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 2.7e-09 65.9 65 52.3
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 3.5e-09 65.5 65 53.8
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.5e-09 65.5 64 54.7
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 3.5e-09 65.5 71 50.7
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.5e-09 65.5 101 42.6
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 3.5e-09 65.5 65 53.8
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 4.5e-09 65.1 66 53.0
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 4.5e-09 65.1 77 50.6
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 5.9e-09 64.7 65 52.3
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 5.9e-09 64.7 101 42.6
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 5.9e-09 64.7 101 42.6
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 7.7e-09 64.3 65 52.3
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 7.7e-09 64.3 65 52.3
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 7.7e-09 64.3 65 52.3
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 7.7e-09 64.3 88 44.3
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 7.7e-09 64.3 65 52.3
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 7.7e-09 64.3 65 52.3
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 1.0e-08 63.9 65 52.3
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 1.0e-08 63.9 65 53.8
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 1.0e-08 63.9 65 52.3
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 1.0e-08 63.9 65 52.3
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 1.0e-08 63.9 65 53.8
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 1.3e-08 63.5 77 48.1
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.3e-08 63.5 65 55.4
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 1.3e-08 63.5 65 52.3
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.7e-08 63.2 65 49.2
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 1.7e-08 63.2 101 41.6
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 1.7e-08 63.2 65 52.3
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 1.7e-08 63.2 65 52.3
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 1.7e-08 63.2 65 52.3
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 1.7e-08 63.2 65 52.3
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 1.7e-08 63.2 65 52.3
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 1.7e-08 63.2 65 52.3
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 1.7e-08 63.2 101 41.6
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 1.7e-08 63.2 65 47.7
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 1.7e-08 63.2 65 52.3
Aa31LG11G3080 Aethionema arabicum HOM05D002077 ORTHO05D000818 2.2e-08 62.8 103 40.8
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 2.2e-08 62.8 65 52.3
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 2.2e-08 62.8 65 52.3
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 2.2e-08 62.8 65 52.3
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 2.2e-08 62.8 65 52.3
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 2.2e-08 62.8 85 44.7
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 2.9e-08 62.4 65 52.3
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 2.9e-08 62.4 65 52.3
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 2.9e-08 62.4 65 52.3
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 2.9e-08 62.4 65 52.3
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 2.9e-08 62.4 65 52.3
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 2.9e-08 62.4 65 50.8
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 2.9e-08 62.4 65 50.8
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 3.8e-08 62.0 65 49.2
PGR042G3255 Punica granatum HOM05D002077 ORTHO05D000818 3.8e-08 62.0 71 45.1
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 3.8e-08 62.0 65 50.8
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 5.0e-08 61.6 65 50.8
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 5.0e-08 61.6 65 53.8
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 6.5e-08 61.2 65 52.3
A06p18870 Brassica napus HOM05D002077 ORTHO05D000818 6.5e-08 61.2 65 52.3
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 6.5e-08 61.2 65 52.3
BolC8t50011H Brassica oleracea HOM05D002077 ORTHO05D000818 6.5e-08 61.2 65 52.3
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 6.5e-08 61.2 101 38.6
RcHm_v2.0_Chr1g0377081 Rosa chinensis HOM05D002077 ORTHO05D000818 6.5e-08 61.2 69 49.3
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 8.5e-08 60.8 63 47.6
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 8.5e-08 60.8 65 49.2
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 8.5e-08 60.8 65 49.2
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 1.1e-07 60.5 65 50.8
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 1.1e-07 60.5 73 43.8
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 1.5e-07 60.1 65 50.8
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 1.5e-07 60.1 65 49.2
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 2.5e-07 59.3 65 50.8
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 2.5e-07 59.3 65 49.2
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 2.5e-07 59.3 73 45.2
Thhalv10005421m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 3.2e-07 58.9 67 50.7
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 3.2e-07 58.9 73 45.2
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 4.2e-07 58.5 65 49.2
Aqoxy3G02725 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 9.4e-07 57.4 65 47.7
BcaB01g00773 Brassica carinata HOM05D002077 ORTHO05D000818 9.4e-07 57.4 61 49.2
QL08p016914 Quercus lobata HOM05D002077 ORTHO05D000818 9.4e-07 57.4 64 50.0
QL08p017090 Quercus lobata HOM05D002077 ORTHO05D000818 9.4e-07 57.4 64 50.0
HPP92_008435 Vanilla planifolia HOM05D002077 ORTHO05D000818 9.4e-07 57.4 65 46.2
HPP92_008461 Vanilla planifolia HOM05D002077 ORTHO05D000818 9.4e-07 57.4 65 46.2
Thhalv10015508m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.2e-06 57.0 66 50.0
Thhalv10015761m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.2e-06 57.0 66 50.0
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.2e-06 57.0 65 50.8
MD09G1057300 Malus domestica HOM05D002077 ORTHO05D000818 1.2e-06 57.0 74 47.3
Psat7g237160 Pisum sativum HOM05D002077 ORTHO05D000818 1.2e-06 57.0 66 45.5
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.6e-06 56.6 101 35.6
Thhalv10016006m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 2.1e-06 56.2 66 50.0
Psat7g237200 Pisum sativum HOM05D002077 ORTHO05D000818 2.7e-06 55.8 66 43.9
Thhalv10015605m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 4.7e-06 55.1 65 49.2
FvH4_7g29340 Fragaria vesca HOM05D002077 ORTHO05D000818 4.7e-06 55.1 65 49.2
PGSC0003DMG402014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.7e-06 55.1 101 39.6
Medtr1g100713 Medicago truncatula HOM05D002077 ORTHO05D000818 8.0e-06 54.3 65 46.2


User provided reference genes

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