Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.8e-268 928.7 477 100.0
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.3e-260 901.7 462 99.8
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-250 868.6 475 95.4
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 3.5e-248 861.3 475 93.7
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 1.0e-247 859.8 475 93.3
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.1e-247 857.4 462 96.3
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 2.5e-222 775.4 475 85.1
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.4e-222 773.9 476 84.9
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 5.1e-215 751.1 379 100.0
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-214 750.0 469 83.4
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 5.9e-211 737.6 491 78.8
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 2.5e-206 722.2 478 78.5
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 2.2e-205 719.2 478 78.7
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 3.1e-196 688.7 477 75.1
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 6.9e-196 687.6 475 74.3
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 2.9e-194 682.2 478 72.4
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.9e-193 679.5 480 72.9
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.4e-191 673.3 476 73.1
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.3e-191 672.5 480 72.5
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 5.1e-191 671.4 477 74.4
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 7.4e-190 667.5 478 72.4
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 3.1e-188 662.1 478 72.0
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 3.1e-188 662.1 478 72.2
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.0e-187 659.4 478 72.0
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 4.5e-187 658.3 478 71.8
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 8.5e-186 654.1 482 71.6
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 4.2e-185 651.7 475 70.7
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 1.2e-184 650.2 487 70.2
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 2.7e-184 649.0 480 70.8
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 2.7e-184 649.0 480 70.8
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 2.3e-183 646.0 478 70.3
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.3e-183 646.0 475 70.5
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 5.2e-183 644.8 476 71.0
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 1.1e-182 643.7 502 67.9
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 2.0e-182 642.9 478 70.9
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 2.6e-182 642.5 475 69.7
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 3.3e-182 642.1 476 71.4
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 7.5e-182 641.0 491 69.0
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.3e-181 640.2 475 70.7
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.7e-181 639.8 475 70.7
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 1.1e-180 637.1 490 68.6
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.4e-180 636.7 475 69.7
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 2.4e-180 636.0 477 70.0
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.4e-180 636.0 485 69.1
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 3.1e-180 635.6 484 69.2
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 4.1e-180 635.2 493 67.1
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 7.0e-180 634.4 477 69.6
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 5.9e-179 631.3 517 65.8
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.2e-178 629.4 475 69.1
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 2.9e-178 629.0 475 69.3
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 6.5e-178 627.9 499 66.7
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.5e-177 626.7 475 68.8
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 2.5e-177 625.9 475 68.8
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 4.2e-177 625.2 478 67.6
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.2e-176 623.6 475 68.8
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.6e-176 623.2 455 71.4
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 3.6e-176 622.1 479 67.0
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 3.6e-176 622.1 509 65.6
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.7e-176 621.7 485 67.6
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 8.0e-176 620.9 475 67.4
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 1.8e-175 619.8 479 69.3
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 2.3e-175 619.4 479 68.1
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 5.2e-175 618.2 476 69.1
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 5.2e-175 618.2 483 67.7
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 6.8e-175 617.8 476 68.7
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.0e-174 616.3 488 66.8
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 2.6e-174 615.9 475 68.8
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 5.7e-174 614.8 477 67.1
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 7.5e-174 614.4 475 67.8
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.8e-173 612.5 476 68.7
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 2.8e-173 612.5 481 68.0
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.1e-172 610.5 475 69.1
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.4e-172 610.1 509 64.8
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 1.8e-172 609.8 475 68.8
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.8e-172 609.8 475 66.5
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 3.1e-172 609.0 479 69.5
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 4.1e-172 608.6 475 68.0
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 9.1e-172 607.4 410 75.1
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.6e-171 606.7 475 67.8
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 2.0e-171 606.3 476 68.7
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 4.5e-171 605.1 475 67.8
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 4.5e-171 605.1 475 67.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 4.5e-171 605.1 471 67.3
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.7e-170 603.2 479 69.7
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 6.5e-170 601.3 528 61.6
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.9e-169 599.7 471 67.3
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 9.4e-169 597.4 484 66.1
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.4e-167 593.6 475 66.9
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 5.2e-167 591.7 475 66.7
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 5.2e-167 591.7 474 67.1
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 2.0e-166 589.7 551 58.3
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 7.5e-166 587.8 475 65.9
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 9.8e-166 587.4 408 72.3
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 2.2e-165 586.3 528 61.9
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 6.3e-165 584.7 488 64.8
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.4e-164 582.8 475 65.9
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 2.4e-164 582.8 475 65.3
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 2.4e-164 582.8 440 69.3
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 7.0e-164 581.3 481 65.5
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.3e-162 577.0 477 66.5
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.7e-162 576.6 475 65.3
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 3.8e-162 575.5 487 64.7
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 5.0e-162 575.1 410 71.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 6.6e-162 574.7 372 76.6
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.5e-161 573.5 466 67.4
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-160 570.5 481 64.4
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 6.1e-160 568.2 489 64.4
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 5.2e-159 565.1 475 64.2
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 8.9e-159 564.3 496 62.1
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 2.9e-157 559.3 487 63.7
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 2.9e-157 559.3 448 65.8
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 2.9e-157 559.3 478 64.0
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 4.9e-157 558.5 478 64.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 6.4e-157 558.1 409 70.9
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 6.4e-157 558.1 332 82.2
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.8e-156 556.6 459 64.7
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 5.0e-154 548.5 486 61.1
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.8e-151 540.0 441 65.1
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 8.9e-151 537.7 488 60.9
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 9.2e-148 527.7 472 59.1
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.1e-144 516.5 446 63.7
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 3.6e-144 515.8 279 87.5
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 6.2e-144 515.0 471 61.6
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 8.9e-143 511.1 476 60.3
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 8.9e-143 511.1 509 57.0
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 4.4e-142 508.8 286 83.9
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 5.4e-140 501.9 500 56.4
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.6e-139 500.4 462 58.0
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.3e-138 496.5 330 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.4e-135 487.3 326 71.2
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.8e-134 481.9 486 54.7
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 4.1e-132 475.7 334 71.3
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.8e-128 463.0 435 57.9
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.1e-127 459.5 578 50.9
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.7e-125 453.8 433 59.4
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.3e-121 439.1 451 54.5
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.3e-120 437.6 270 73.7
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.8e-119 433.7 356 62.6
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.2e-115 421.0 480 52.7
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.0e-114 417.9 444 53.2
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 4.2e-108 396.0 388 55.9
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.2e-99 367.9 287 65.2
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.6e-99 367.5 337 56.4
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 2.5e-97 360.1 434 47.5
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.3e-77 294.7 481 41.8
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.4e-74 284.6 263 55.1
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.6e-67 260.0 474 40.9
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.6e-65 253.8 201 71.6
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.3e-53 214.2 388 35.6
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 3.8e-45 186.8 248 48.0
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 4.1e-39 166.8 203 50.7
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 6.6e-37 159.5 120 67.5
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.9e-28 131.3 81 75.3
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 4.3e-28 130.2 135 50.4
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.5e-20 105.1 134 44.8
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 4.3e-20 103.6 109 48.6
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 8.9e-18 95.9 217 35.9
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 2.4e-15 87.8 204 38.7
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 3.6e-11 73.9 193 36.3
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.4e-07 62.0 208 23.6


User provided reference genes

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