Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1404.0 729 100.0
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1368.6 729 97.8
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1125.2 752 82.4
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1092.8 744 81.0
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1077.8 719 81.9
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.5e-262 907.5 730 71.2
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.2e-251 871.3 733 69.4
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 9.8e-226 787.3 768 62.0
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 1.5e-210 736.9 519 78.2
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 7.6e-210 734.6 705 64.4
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.9e-209 731.9 517 78.1
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 7.9e-159 565.1 360 87.2
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 4.3e-80 303.5 563 43.5
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 6.7e-65 253.1 756 35.1
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.6e-63 248.4 758 34.6
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.1e-59 235.7 758 34.2
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 9.3e-59 232.6 765 32.9
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 4.3e-56 223.8 851 30.7
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 9.0e-54 216.1 495 39.2
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 3.8e-52 210.7 470 38.3
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.8e-49 201.8 759 31.8
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.1e-46 192.6 471 37.2
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.2e-45 189.1 825 29.5
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.0e-44 183.7 380 37.1
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 8.5e-44 183.0 377 40.1
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 4.2e-43 180.6 615 32.0
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.2e-42 179.1 773 29.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.6e-42 178.7 717 30.0
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 4.7e-42 177.2 458 35.6
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.8e-41 175.3 359 39.3
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.1e-40 172.6 598 31.8
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.1e-40 172.6 773 29.9
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.2e-39 168.3 365 37.3
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 2.8e-39 167.9 446 33.4
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 3.7e-39 167.5 809 29.9
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 6.3e-39 166.8 735 30.3
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.8e-38 165.2 400 36.8
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 4.1e-38 164.1 546 33.5
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 4.1e-38 164.1 376 39.9
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.1e-38 164.1 422 34.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 5.3e-38 163.7 745 28.2
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 9.1e-38 162.9 829 29.3
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.2e-37 162.5 431 36.2
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 3.5e-37 161.0 467 32.8
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 4.5e-37 160.6 535 32.1
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 5.9e-37 160.2 402 35.8
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 7.7e-37 159.8 515 32.0
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 1.0e-36 159.5 419 35.6
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 3.2e-35 154.5 762 27.0
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 2.1e-34 151.8 765 27.1
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.7e-34 151.4 704 27.8
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.8e-33 148.7 372 37.1
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.0e-32 145.2 368 37.2
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 9.7e-32 142.9 679 29.9
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 8.2e-31 139.8 733 29.1
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 5.3e-30 137.1 458 31.4
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.2e-29 136.0 730 27.4
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.2e-29 136.0 460 30.9
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.5e-29 134.4 802 27.1
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 5.9e-29 133.7 220 44.5
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.9e-29 133.7 527 30.2
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 1.3e-28 132.5 446 33.9
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.7e-28 132.1 431 33.4
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 3.8e-28 131.0 329 34.3
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.1e-27 129.4 739 27.9
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.1e-27 129.4 590 28.6
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 3.2e-27 127.9 748 26.9
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 4.2e-27 127.5 739 27.3
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 9.4e-27 126.3 287 40.1
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 1.4e-25 122.5 817 25.3
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 5.2e-25 120.6 787 28.0
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 6.8e-25 120.2 485 30.3
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 2.0e-24 118.6 454 29.5
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 3.4e-24 117.9 604 27.6
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 3.4e-24 117.9 330 33.0
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.4e-24 117.9 453 30.2
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 7.5e-24 116.7 720 27.1
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 7.5e-24 116.7 515 28.3
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 9.8e-24 116.3 722 26.2
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-23 115.9 509 28.5
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.3e-23 115.9 509 28.5
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.3e-23 115.9 539 29.3
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.3e-23 115.9 459 29.8
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.7e-23 115.5 166 46.4
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 4.8e-23 114.0 508 27.6
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 6.3e-23 113.6 522 28.5
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 8.3e-23 113.2 388 30.4
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.1e-22 112.8 431 31.1
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.1e-22 112.8 231 40.3
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.4e-22 112.5 488 29.7
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 1.8e-22 112.1 638 28.1
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.8e-22 112.1 522 28.9
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 4.1e-22 110.9 196 40.8
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 5.4e-22 110.5 205 42.0
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 9.1e-22 109.8 471 29.5
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 9.1e-22 109.8 446 28.5
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 9.1e-22 109.8 446 29.8
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.6e-21 109.0 371 33.2
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 3.5e-21 107.8 385 31.7
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 7.7e-21 106.7 516 27.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.0e-20 106.3 444 29.3
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.7e-20 105.5 406 31.8
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.5e-19 102.4 521 29.2
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 3.2e-19 101.3 194 41.2
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.8e-18 98.2 389 29.6
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 3.6e-18 97.8 731 26.7
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 3.6e-18 97.8 437 29.5
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 8.0e-18 96.7 432 29.2
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.4e-17 95.9 272 35.7
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 2.3e-17 95.1 490 27.6
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.3e-17 95.1 382 32.2
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 3.0e-17 94.7 430 27.7
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 3.0e-17 94.7 409 29.8
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.0e-17 94.4 484 27.1
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 6.8e-17 93.6 571 28.2
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.2e-16 92.8 359 26.2
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.6e-16 91.7 678 24.8
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-15 88.6 834 24.9
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-15 88.6 479 27.8
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 2.2e-15 88.6 306 34.0
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.7e-15 87.8 682 26.0
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.7e-15 87.8 715 25.5
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 3.7e-15 87.8 479 27.3
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 4.9e-15 87.4 383 29.0
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 5.4e-14 84.0 350 28.0
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.2e-13 82.8 425 28.9
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.6e-13 82.4 212 34.4
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 2.0e-13 82.0 323 32.5
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 4.5e-13 80.9 495 26.7
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 7.8e-13 80.1 239 35.6
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.0e-12 79.7 409 25.4
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 5.0e-12 77.4 480 26.9
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 5.0e-12 77.4 306 33.3
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.9e-11 75.5 303 33.7
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 5.6e-11 73.9 120 44.2
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 3.6e-10 71.2 199 35.7
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 6.1e-10 70.5 165 37.6
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 8.0e-10 70.1 351 27.1
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.0e-09 69.7 112 41.1
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 1.0e-09 69.7 112 41.1
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.0e-09 69.7 311 31.5
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-09 69.3 110 40.9
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 1.4e-09 69.3 110 40.9
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.8e-09 68.9 175 32.6
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 3.0e-09 68.2 110 40.0
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 3.0e-09 68.2 165 37.0
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 5.2e-09 67.4 90 48.9
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 5.2e-09 67.4 178 39.3
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.2e-08 66.2 201 32.8
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 2.6e-08 65.1 107 43.0
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.4e-08 64.7 116 42.2
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.4e-08 64.7 232 28.4
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 4.4e-08 64.3 202 34.7
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 7.5e-08 63.5 111 37.8
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 7.5e-08 63.5 175 32.0
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 1.3e-07 62.8 220 27.7
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 2.2e-07 62.0 693 23.8
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 2.9e-07 61.6 111 45.0
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 2.9e-07 61.6 100 40.0
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 3.7e-07 61.2 105 41.0
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 3.7e-07 61.2 111 37.8
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 4.9e-07 60.8 191 33.0
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 4.9e-07 60.8 124 35.5
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 8.3e-07 60.1 242 28.9
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 1.1e-06 59.7 196 28.1
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.4e-06 59.3 212 29.7
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 1.4e-06 59.3 160 32.5
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.8e-06 58.9 232 29.7
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 2.4e-06 58.5 112 39.3
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 3.2e-06 58.2 149 33.6
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 3.2e-06 58.2 100 33.0
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 4.1e-06 57.8 187 31.0
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 4.1e-06 57.8 116 34.5
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 7.0e-06 57.0 183 30.6
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 7.0e-06 57.0 135 34.1
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 7.0e-06 57.0 115 35.7
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 9.2e-06 56.6 137 32.8
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.2e-06 56.6 102 35.3


User provided reference genes

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