Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 7.0e-167 590.5 289 100.0
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 2.5e-140 502.3 301 85.0
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.2e-139 500.0 295 86.1
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 2.1e-139 499.2 300 84.0
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.9e-136 488.8 301 82.7
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 3.3e-116 422.2 287 74.6
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 1.6e-115 419.9 299 73.2
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 1.8e-114 416.4 220 93.2
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 1.6e-107 393.3 296 67.6
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 1.1e-100 370.5 297 65.3
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 1.1e-98 364.0 293 65.9
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 4.0e-98 362.1 291 66.3
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 5.3e-98 361.7 289 65.4
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 2.9e-96 355.9 277 67.9
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 3.8e-96 355.5 224 76.3
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 1.1e-95 354.0 225 75.1
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 1.4e-95 353.6 280 65.0
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 3.2e-95 352.4 279 64.9
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 3.2e-95 352.4 295 60.7
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 4.2e-95 352.1 295 60.7
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 5.5e-95 351.7 235 73.2
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 1.2e-94 350.5 222 77.9
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 3.5e-94 349.0 282 64.5
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 4.6e-94 348.6 289 64.7
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.0e-93 347.4 290 61.4
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 5.1e-93 345.1 230 73.9
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 1.3e-91 340.5 294 63.6
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 2.2e-91 339.7 226 73.5
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 2.8e-91 339.3 292 63.4
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 2.8e-91 339.3 226 72.6
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 2.8e-91 339.3 226 73.9
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 8.2e-91 337.8 226 72.6
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 3.1e-90 335.9 293 58.4
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 3.1e-90 335.9 294 62.6
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 5.3e-90 335.1 227 70.5
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 6.9e-90 334.7 226 70.8
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 6.9e-90 334.7 254 67.3
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 2.0e-89 333.2 289 61.6
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 2.6e-89 332.8 291 62.9
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 2.6e-89 332.8 229 69.4
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 7.7e-89 331.3 226 71.7
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.0e-88 330.9 288 60.8
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 1.7e-88 330.1 226 69.9
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.7e-88 330.1 287 60.3
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 2.2e-88 329.7 275 63.6
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 3.8e-88 328.9 226 71.2
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 5.0e-88 328.6 226 70.4
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 6.5e-88 328.2 227 70.9
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 6.5e-88 328.2 236 68.2
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 8.5e-88 327.8 291 62.2
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 1.1e-87 327.4 226 72.1
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 1.1e-87 327.4 226 71.2
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 1.4e-87 327.0 227 69.6
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 3.2e-87 325.9 291 61.9
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 5.5e-87 325.1 226 69.5
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 7.2e-87 324.7 226 70.4
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 9.4e-87 324.3 226 70.8
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 9.4e-87 324.3 227 69.6
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 9.4e-87 324.3 226 69.5
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 9.4e-87 324.3 226 69.5
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 1.6e-86 323.6 226 69.5
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 2.1e-86 323.2 291 59.8
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 6.1e-86 321.6 226 69.5
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 1.4e-85 320.5 226 68.1
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 2.3e-85 319.7 226 69.0
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 3.0e-85 319.3 236 67.8
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 3.9e-85 318.9 226 67.7
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 3.9e-85 318.9 234 68.8
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 1.5e-84 317.0 227 68.3
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 1.5e-84 317.0 226 66.8
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 2.0e-84 316.6 236 67.4
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 2.5e-84 316.2 236 69.1
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 4.3e-84 315.5 229 69.0
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 4.3e-84 315.5 298 56.4
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 8.2e-83 311.2 286 58.0
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 3.1e-82 309.3 291 57.0
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 3.1e-82 309.3 224 67.9
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 4.1e-82 308.9 224 67.9
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 9.4e-79 297.7 273 57.5
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 1.2e-78 297.4 231 66.7
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 2.1e-78 296.6 289 56.4
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 1.0e-77 294.3 285 56.1
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 6.7e-77 291.6 226 65.9
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 1.5e-76 290.4 232 61.6
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 5.7e-76 288.5 285 55.1
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 1.4e-74 283.9 230 63.9
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 3.5e-73 279.3 202 66.3
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 2.2e-72 276.6 229 60.7
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 6.5e-72 275.0 227 59.9
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 8.5e-72 274.6 224 61.6
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 1.4e-71 273.9 226 61.1
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 2.3e-69 266.5 225 58.2
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 8.8e-69 264.6 236 56.4
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 1.1e-68 264.2 226 65.5
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.4e-61 240.7 215 54.9
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 3.7e-59 232.6 180 62.2
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 4.0e-53 212.6 229 48.0
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 6.8e-53 211.8 231 48.5
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 2.2e-51 206.8 226 45.6
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 3.5e-49 199.5 235 45.1
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 4.4e-44 182.6 188 54.8
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 1.7e-43 180.6 260 39.6
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 1.2e-38 164.5 193 48.7
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.4e-37 161.0 242 38.8
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 3.4e-36 156.4 247 40.5
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 6.4e-35 152.1 122 63.1
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 8.3e-35 151.8 228 37.3
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 1.4e-34 151.0 104 68.3
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 5.4e-34 149.1 169 52.1
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 3.5e-33 146.4 107 65.4
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 1.1e-29 134.8 121 62.0
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 3.1e-21 106.7 78 70.5
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 2.7e-09 67.0 44 61.4
CsaV3_5G026220 Cucumis sativus L. HOM05D002933 ORTHO05D007742 6.6e-08 62.4 118 28.8


User provided reference genes

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