Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4294 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.7e-85 318.5 153 100.0
FAN09G4125 Fragaria x ananassa HOM05D003116 ORTHO05D003619 8.3e-34 147.5 161 56.5
FvH4_6g17270 Fragaria vesca HOM05D003116 ORTHO05D003619 2.2e-18 96.3 79 69.6
Atru.chr8.1700 Acer truncatum HOM05D003116 ORTHO05D003619 5.4e-17 91.7 76 63.2
Duzib128G1204 Durio zibethinus HOM05D003116 ORTHO05D003619 2.1e-16 89.7 76 63.2
BcaC07g37718 Brassica carinata HOM05D003116 ORTHO05D003619 4.6e-16 88.6 74 62.2
A08p10310 Brassica napus HOM05D003116 ORTHO05D003619 4.6e-16 88.6 74 62.2
BolC8t48097H Brassica oleracea HOM05D003116 ORTHO05D003619 4.6e-16 88.6 74 62.2
BraA08t33029Z Brassica rapa HOM05D003116 ORTHO05D003619 4.6e-16 88.6 74 62.2
BraA08t33030Z Brassica rapa HOM05D003116 ORTHO05D003619 4.6e-16 88.6 74 62.2
TAR636G1994 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.0e-15 87.4 76 59.2
TAR636G1518 Trochodendron aralioides HOM05D003116 ORTHO05D003619 3.9e-15 85.5 76 57.9
TAR636G1363 Trochodendron aralioides HOM05D003116 ORTHO05D003619 5.1e-15 85.1 75 58.7
COL.COLO4_22257 Corchorus olitorius HOM05D003116 ORTHO05D003619 1.1e-14 84.0 68 66.2
Lsat_1_v5_gn_8_2981 Lactuca sativa HOM05D003116 ORTHO05D003619 1.1e-14 84.0 75 57.3
TAR625G1207 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.1e-14 84.0 75 57.3
Peaxi162Scf00135g01111 Petunia axillaris HOM05D003116 ORTHO05D003619 1.5e-14 83.6 75 57.3
GSVIVG01019146001 Vitis vinifera HOM05D003116 ORTHO05D003619 1.5e-14 83.6 68 63.2
Thecc.05G075800 Theobroma cacao HOM05D003116 ORTHO05D003619 1.9e-14 83.2 76 59.2
Actinidia38911 Actinidia chinensis HOM05D003116 ORTHO05D003619 2.5e-14 82.8 68 64.7
Ah.13g070600 Amaranthus hybridus HOM05D003116 ORTHO05D003619 2.5e-14 82.8 75 56.0
CARHR168750 Cardamine hirsuta HOM05D003116 ORTHO05D003619 3.3e-14 82.4 75 56.0
Glyma.19G188500 Glycine max HOM05D003116 ORTHO05D003619 3.3e-14 82.4 74 55.4
Gohir.D08G244300 Gossypium hirsutum HOM05D003116 ORTHO05D003619 3.3e-14 82.4 68 63.2
Gorai.004G260600 Gossypium raimondii HOM05D003116 ORTHO05D003619 3.3e-14 82.4 68 63.2
Nn3g20158 Nelumbo nucifera HOM05D003116 ORTHO05D003619 3.3e-14 82.4 68 63.2
BcaB04g18111 Brassica carinata HOM05D003116 ORTHO05D003619 4.3e-14 82.0 74 55.4
CSS0019586 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 4.3e-14 82.0 73 57.5
Sp7g25620 Schrenkiella parvula HOM05D003116 ORTHO05D003619 4.3e-14 82.0 68 60.3
Aa31LG7G11540 Aethionema arabicum HOM05D003116 ORTHO05D003619 5.6e-14 81.6 75 56.0
EL10Ac4g09413 Beta vulgaris HOM05D003116 ORTHO05D003619 5.6e-14 81.6 75 54.7
BcaC06g32676 Brassica carinata HOM05D003116 ORTHO05D003619 5.6e-14 81.6 68 60.3
A03p57410 Brassica napus HOM05D003116 ORTHO05D003619 5.6e-14 81.6 68 60.3
C07p55620 Brassica napus HOM05D003116 ORTHO05D003619 5.6e-14 81.6 68 60.3
BolC7t46042H Brassica oleracea HOM05D003116 ORTHO05D003619 5.6e-14 81.6 68 60.3
BraA03t14807Z Brassica rapa HOM05D003116 ORTHO05D003619 5.6e-14 81.6 68 60.3
Carub.0007s1320 Capsella rubella HOM05D003116 ORTHO05D003619 5.6e-14 81.6 75 54.7
Sed0017776 Sechium edule HOM05D003116 ORTHO05D003619 5.6e-14 81.6 75 56.0
EL10Ac1g01549 Beta vulgaris HOM05D003116 ORTHO05D003619 7.3e-14 81.3 77 54.5
CARHR235350 Cardamine hirsuta HOM05D003116 ORTHO05D003619 7.3e-14 81.3 68 60.3
Duzib128G0562 Durio zibethinus HOM05D003116 ORTHO05D003619 7.3e-14 81.3 68 61.8
Thhalv10025473m.g Eutrema salsugineum HOM05D003116 ORTHO05D003619 7.3e-14 81.3 68 58.8
TAR636G0211 Trochodendron aralioides HOM05D003116 ORTHO05D003619 7.3e-14 81.3 75 56.0
vmacro10396 Vaccinium macrocarpon HOM05D003116 ORTHO05D003619 7.3e-14 81.3 68 63.2
Atru.chr12.2147 Acer truncatum HOM05D003116 ORTHO05D003619 9.5e-14 80.9 75 56.0
CSS0045595 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 9.5e-14 80.9 73 56.2
CAN.G186.68 Capsicum annuum HOM05D003116 ORTHO05D003619 9.5e-14 80.9 75 53.3
MBI11_g04280_MAGBIO Magnolia biondii HOM05D003116 ORTHO05D003619 9.5e-14 80.9 68 61.8
Oeu033264.1 Olea europaea HOM05D003116 ORTHO05D003619 9.5e-14 80.9 68 61.8
PSO357G0261 Papaver somniferum HOM05D003116 ORTHO05D003619 9.5e-14 80.9 68 61.8
PGR119G1776 Punica granatum HOM05D003116 ORTHO05D003619 9.5e-14 80.9 68 60.3
PGSC0003DMG400025436 Solanum tuberosum HOM05D003116 ORTHO05D003619 9.5e-14 80.9 75 53.3
MELO3C008594.2 Cucumis melo HOM05D003116 ORTHO05D003619 1.2e-13 80.5 68 60.3
Dinv37361 Davidia involucrata HOM05D003116 ORTHO05D003619 1.2e-13 80.5 66 65.2
Nitab4.5_0007901g0020 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.2e-13 80.5 75 53.3
Nitab4.5_0009004g0010 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.2e-13 80.5 75 53.3
ClCG11G007480 Citrullus lanatus HOM05D003116 ORTHO05D003619 1.6e-13 80.1 68 60.3
Gohir.A08G224000 Gossypium hirsutum HOM05D003116 ORTHO05D003619 1.6e-13 80.1 68 61.8
Manes.08G104900 Manihot esculenta HOM05D003116 ORTHO05D003619 1.6e-13 80.1 68 61.8
Hund07322 Selenicereus undatus HOM05D003116 ORTHO05D003619 1.6e-13 80.1 68 61.8
Thecc.05G204800 Theobroma cacao HOM05D003116 ORTHO05D003619 1.6e-13 80.1 68 61.8
Eucgr.B01382 Eucalyptus grandis HOM05D003116 ORTHO05D003619 2.1e-13 79.7 75 56.0
Psat3g038280 Pisum sativum HOM05D003116 ORTHO05D003619 2.1e-13 79.7 67 61.2
Solyc04g009810.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 2.1e-13 79.7 75 53.3
Sopen04g004940 Solanum pennellii HOM05D003116 ORTHO05D003619 2.1e-13 79.7 75 53.3
AL7G25070 Arabidopsis lyrata HOM05D003116 ORTHO05D003619 2.8e-13 79.3 75 53.3
BcaNung01649 Brassica carinata HOM05D003116 ORTHO05D003619 2.8e-13 79.3 68 58.8
Duzib177G0648 Durio zibethinus HOM05D003116 ORTHO05D003619 2.8e-13 79.3 68 60.3
Migut.F01553 Erythranthe guttata HOM05D003116 ORTHO05D003619 2.8e-13 79.3 74 54.1
HanXRQChr05g0156871 Helianthus annuus HOM05D003116 ORTHO05D003619 2.8e-13 79.3 75 53.3
Rhsim09G0131200 Rhododendron simsii HOM05D003116 ORTHO05D003619 2.8e-13 79.3 68 60.3
VMungo1383G1045 Vigna mungo HOM05D003116 ORTHO05D003619 2.8e-13 79.3 67 61.2
Aa31LG7G11530 Aethionema arabicum HOM05D003116 ORTHO05D003619 3.6e-13 79.0 75 54.7
CSS0019916 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 3.6e-13 79.0 68 58.8
ECA233G1402 Erigeron canadensis HOM05D003116 ORTHO05D003619 3.6e-13 79.0 75 54.7
Phvul.001G183700 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 3.6e-13 79.0 67 61.2
AT4G27650 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 4.7e-13 78.6 75 53.3
Prupe.6G358700 Prunus persica HOM05D003116 ORTHO05D003619 4.7e-13 78.6 75 54.7
Prupe.7G122700 Prunus persica HOM05D003116 ORTHO05D003619 4.7e-13 78.6 75 60.0
Sp7g11900 Schrenkiella parvula HOM05D003116 ORTHO05D003619 4.7e-13 78.6 74 55.4
Thecc.01G141600 Theobroma cacao HOM05D003116 ORTHO05D003619 4.7e-13 78.6 76 55.3
TWI14G0774 Tripterygium wilfordii HOM05D003116 ORTHO05D003619 4.7e-13 78.6 68 58.8
DCAR_014783 Daucus carota HOM05D003116 ORTHO05D003619 6.2e-13 78.2 68 57.4
MD04G1241200 Malus domestica HOM05D003116 ORTHO05D003619 6.2e-13 78.2 75 54.7
RcHm_v2.0_Chr3g0448271 Rosa chinensis HOM05D003116 ORTHO05D003619 6.2e-13 78.2 75 53.3
SGA_v2.0_scaffold7G04085 Striga asiatica HOM05D003116 ORTHO05D003619 6.2e-13 78.2 68 57.4
THA.LOC104821795 Tarenaya hassleriana HOM05D003116 ORTHO05D003619 6.2e-13 78.2 68 57.4
RcHm_v2.0_Chr4g0442151 Rosa chinensis HOM05D003116 ORTHO05D003619 8.1e-13 77.8 75 54.7
SEGI_30925 Sequoiadendron giganteum HOM05D003116 ORTHO05D003619 8.1e-13 77.8 75 56.0
GSVIVG01033716001 Vitis vinifera HOM05D003116 ORTHO05D003619 8.1e-13 77.8 74 54.1
ATR0609G064 Amborella trichopoda HOM05D003116 ORTHO05D003619 1.1e-12 77.4 68 54.4
ATR0743G097 Amborella trichopoda HOM05D003116 ORTHO05D003619 1.1e-12 77.4 74 51.4
BraA01t01835Z Brassica rapa HOM05D003116 ORTHO05D003619 1.1e-12 77.4 68 58.8
COL.COLO4_11895 Corchorus olitorius HOM05D003116 ORTHO05D003619 1.1e-12 77.4 75 56.0
Hma1.2p1_0171F.1_g075610 Hydrangea macrophylla HOM05D003116 ORTHO05D003619 1.1e-12 77.4 68 57.4
Medtr7g102760 Medicago truncatula HOM05D003116 ORTHO05D003619 1.1e-12 77.4 67 58.2
Aqoxy2G04101 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 1.4e-12 77.0 77 51.9
MSTRG.9020 Avicennia marina HOM05D003116 ORTHO05D003619 1.4e-12 77.0 68 57.4
BolC1t02337H Brassica oleracea HOM05D003116 ORTHO05D003619 1.4e-12 77.0 69 56.5
AagrBONN_evm.TU.Sc2ySwM_344.2897 Anthoceros agrestis HOM05D003116 ORTHO05D003619 1.8e-12 76.6 67 59.7
SalBow8G0641 Salvia bowleyana HOM05D003116 ORTHO05D003619 1.8e-12 76.6 75 50.7
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.3e-12 76.3 62 64.5
CANSAT54G1522 Cannabis sativa HOM05D003116 ORTHO05D003619 2.3e-12 76.3 68 57.4
RcHm_v2.0_Chr3g0471381 Rosa chinensis HOM05D003116 ORTHO05D003619 2.3e-12 76.3 52 75.0
Sabra05G0155200 Salix brachista HOM05D003116 ORTHO05D003619 2.3e-12 76.3 75 50.7
HPP92_011793 Vanilla planifolia HOM05D003116 ORTHO05D003619 2.3e-12 76.3 68 58.8
AT3G58390 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 3.1e-12 75.9 68 58.8
Lj1g0028191 Lotus japonicus HOM05D003116 ORTHO05D003619 3.1e-12 75.9 79 49.4
Os04g0659900 Oryza sativa ssp. japonica HOM05D003116 ORTHO05D003619 3.1e-12 75.9 68 61.8
Pp3c4_11130 Physcomitrium patens HOM05D003116 ORTHO05D003619 3.1e-12 75.9 67 58.2
Sc25g0001690 Simmondsia chinensis HOM05D003116 ORTHO05D003619 3.1e-12 75.9 75 53.3
unitig_748.g8763 Utricularia gibba HOM05D003116 ORTHO05D003619 3.1e-12 75.9 75 50.7
AUR62000365 Chenopodium quinoa HOM05D003116 ORTHO05D003619 4.0e-12 75.5 75 53.3
AUR62006711 Chenopodium quinoa HOM05D003116 ORTHO05D003619 4.0e-12 75.5 75 53.3
AUR62006712 Chenopodium quinoa HOM05D003116 ORTHO05D003619 4.0e-12 75.5 75 53.3
MD12G1258200 Malus domestica HOM05D003116 ORTHO05D003619 5.2e-12 75.1 68 55.9
Aqoxy5G00402 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 6.8e-12 74.7 75 52.0
AUR62036544 Chenopodium quinoa HOM05D003116 ORTHO05D003619 6.8e-12 74.7 75 50.7
FvH4_6g00790 Fragaria vesca HOM05D003116 ORTHO05D003619 6.8e-12 74.7 75 52.0
FAN02G4520 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.8e-12 74.7 75 52.0
FAN05G0861 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.8e-12 74.7 75 52.0
FAN09G4293 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.8e-12 74.7 75 52.0
Peaxi162Scf00110g00082 Petunia axillaris HOM05D003116 ORTHO05D003619 6.8e-12 74.7 73 54.8
Sed0012106 Sechium edule HOM05D003116 ORTHO05D003619 6.8e-12 74.7 75 52.0
CiPaw.02G065200 Carya illinoinensis HOM05D003116 ORTHO05D003619 8.9e-12 74.3 68 55.9
Ciclev10023555m.g Citrus clementina HOM05D003116 ORTHO05D003619 8.9e-12 74.3 68 55.9
FAN14G1801 Fragaria x ananassa HOM05D003116 ORTHO05D003619 8.9e-12 74.3 75 52.0
Lj2P124T66 Lonicera japonica HOM05D003116 ORTHO05D003619 8.9e-12 74.3 68 58.8
Mapoly0014s0040 Marchantia polymorpha HOM05D003116 ORTHO05D003619 8.9e-12 74.3 67 59.7
Actinidia29561 Actinidia chinensis HOM05D003116 ORTHO05D003619 1.2e-11 73.9 76 55.3
Cfa006285 Carpinus fangiana HOM05D003116 ORTHO05D003619 1.2e-11 73.9 68 57.4
Haze_04522 Corylus avellana HOM05D003116 ORTHO05D003619 1.2e-11 73.9 68 57.4
Lalb_Chr06g0168431 Lupinus albus HOM05D003116 ORTHO05D003619 1.2e-11 73.9 68 57.4
Potri.005G204500 Populus trichocarpa HOM05D003116 ORTHO05D003619 1.2e-11 73.9 75 49.3
Lj7C705G3 Lonicera japonica HOM05D003116 ORTHO05D003619 1.5e-11 73.6 67 59.7
PSO210G3889 Papaver somniferum HOM05D003116 ORTHO05D003619 2.0e-11 73.2 67 56.7
PRCOL_00002239 Prasinoderma coloniale HOM05D003116 ORTHO05D003619 2.0e-11 73.2 73 46.6
AagrBONN_evm.TU.Sc2ySwM_228.5685 Anthoceros agrestis HOM05D003116 ORTHO05D003619 2.6e-11 72.8 67 58.2
VMungo0720G2849 Vigna mungo HOM05D003116 ORTHO05D003619 2.6e-11 72.8 68 55.9
Lalb_Chr25g0288771 Lupinus albus HOM05D003116 ORTHO05D003619 4.4e-11 72.0 67 55.2
Phvul.010G077790 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 4.4e-11 72.0 68 55.9
arahy.Tifrunner.gnm1.ann1.W3HBVG Arachis hypogaea HOM05D003116 ORTHO05D003619 5.8e-11 71.6 68 55.9
arahy.Tifrunner.gnm1.ann1.6AR5V7 Arachis hypogaea HOM05D003116 ORTHO05D003619 7.6e-11 71.2 68 55.9
arahy.Tifrunner.gnm1.ann1.9IK2W2 Arachis hypogaea HOM05D003116 ORTHO05D003619 7.6e-11 71.2 68 55.9
Glyma.20G219800 Glycine max HOM05D003116 ORTHO05D003619 9.9e-11 70.9 68 54.4
SMO356G0619 Selaginella moellendorffii HOM05D003116 ORTHO05D003619 9.9e-11 70.9 67 56.7
CBR_g24366 Chara braunii HOM05D003116 ORTHO05D003619 2.2e-10 69.7 74 45.9
FAN07G2794 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.2e-10 69.7 73 52.1
FAN17G2384 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.9e-10 69.3 73 52.1
Cre09.g388615 Chlamydomonas reinhardtii HOM05D003116 ORTHO05D003619 3.8e-10 68.9 74 47.3
Zm00001eb067580 Zea mays HOM05D003116 ORTHO05D003619 3.8e-10 68.9 69 55.1
Glyma.10G170200 Glycine max HOM05D003116 ORTHO05D003619 4.9e-10 68.6 68 52.9
Lj5g0010554 Lotus japonicus HOM05D003116 ORTHO05D003619 4.9e-10 68.6 68 51.5
TPR.G14646 Trifolium pratense HOM05D003116 ORTHO05D003619 4.9e-10 68.6 68 51.5
FvH4_4g33100 Fragaria vesca HOM05D003116 ORTHO05D003619 6.4e-10 68.2 73 50.7
FAN12G0407 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.4e-10 68.2 73 50.7
FAN22G1543 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.4e-10 68.2 73 50.7
arahy.Tifrunner.gnm1.ann1.3K81QB Arachis hypogaea HOM05D003116 ORTHO05D003619 8.4e-10 67.8 74 50.0
Eucgr.B01384 Eucalyptus grandis HOM05D003116 ORTHO05D003619 8.4e-10 67.8 64 57.8
Medtr1g078400 Medicago truncatula HOM05D003116 ORTHO05D003619 8.4e-10 67.8 68 51.5
Psat6g052120 Pisum sativum HOM05D003116 ORTHO05D003619 8.4e-10 67.8 68 51.5
FAN05G2101 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.4e-09 67.0 30 100.0
MCO02G454 Micromonas commoda HOM05D003116 ORTHO05D003619 1.4e-09 67.0 67 49.3
arahy.Tifrunner.gnm1.ann1.T6DYUJ Arachis hypogaea HOM05D003116 ORTHO05D003619 1.9e-09 66.6 74 48.6
BcaC09g50563 Brassica carinata HOM05D003116 ORTHO05D003619 4.1e-09 65.5 60 55.0
Aqoxy2G00490 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 5.4e-09 65.1 74 48.6
arahy.Tifrunner.gnm1.ann1.I0YB5S Arachis hypogaea HOM05D003116 ORTHO05D003619 7.1e-09 64.7 74 47.3
Ca_09971_v3 Cicer arietinum L. HOM05D003116 ORTHO05D003619 7.1e-09 64.7 68 50.0
Nitab4.5_0000132g0470 Nicotiana tabacum HOM05D003116 ORTHO05D003619 9.2e-09 64.3 76 52.6
Solyc10g083770.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 9.2e-09 64.3 76 48.7
Actinidia39860 Actinidia chinensis HOM05D003116 ORTHO05D003619 2.1e-08 63.2 75 48.0
arahy.Tifrunner.gnm1.ann1.PEQF49 Arachis hypogaea HOM05D000048 ORTHO05D003619 2.1e-08 63.2 65 52.3
CAN.G541.24 Capsicum annuum HOM05D003116 ORTHO05D003619 3.5e-08 62.4 76 46.1
Nitab4.5_0010350g0020 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.0e-07 60.8 76 47.4
Potri.004G092600 Populus trichocarpa HOM05D003116 ORTHO05D003619 1.3e-07 60.5 68 52.9
Cc02_g09230 Coffea canephora HOM05D003116 ORTHO05D003619 2.3e-07 59.7 47 61.7
arahy.Tifrunner.gnm1.ann1.U29Z63 Arachis hypogaea HOM05D003116 ORTHO05D003619 5.1e-07 58.5 74 44.6
PGSC0003DMG400028274 Solanum tuberosum HOM05D003116 ORTHO05D003619 5.1e-07 58.5 76 44.7
Gohir.A04G068200 Gossypium hirsutum HOM05D003116 ORTHO05D003619 4.3e-06 55.5 75 45.3
QL05p031548 Quercus lobata HOM05D003116 ORTHO05D003619 4.3e-06 55.5 58 53.4


User provided reference genes

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