Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4173 Fragaria x ananassa HOM05D016056 ORTHO05D014811 6.5e-182 640.6 318 100.0
FAN09G2219 Fragaria x ananassa HOM05D016056 ORTHO05D014811 1.8e-67 260.4 258 60.1
FAN05G0532 Fragaria x ananassa HOM05D016056 ORTHO05D014811 4.8e-60 235.7 175 72.6
FAN14G3315 Fragaria x ananassa HOM05D016056 ORTHO05D014811 1.8e-54 217.2 389 42.7
RcHm_v2.0_Chr7g0220171 Rosa chinensis HOM05D000113 ORTHO05D006161 3.0e-46 189.9 461 34.5
Prupe.1G193500 Prunus persica HOM05D000113 ORTHO05D006161 6.3e-44 182.2 257 45.1
MD04G1241500 Malus domestica HOM05D000113 ORTHO05D006161 3.8e-41 172.9 251 45.8
Prupe.1G445700 Prunus persica HOM05D000113 ORTHO05D006161 1.1e-40 171.4 274 42.0
FvH4_6g48600 Fragaria vesca HOM05D016056 ORTHO05D014811 1.9e-40 170.6 201 54.7
FAN09G2121 Fragaria x ananassa HOM05D016056 ORTHO05D014811 7.2e-40 168.7 188 54.8
RcHm_v2.0_Chr4g0407811 Rosa chinensis HOM05D000113 ORTHO05D006161 2.3e-38 163.7 257 43.6
FvH4_3g40090 Fragaria vesca HOM05D000113 ORTHO05D006161 6.8e-38 162.2 257 43.2
FAN21G3024 Fragaria x ananassa HOM05D000113 ORTHO05D006161 1.5e-37 161.0 257 43.2
FAN11G2310 Fragaria x ananassa HOM05D000113 ORTHO05D006161 2.6e-37 160.2 257 42.8
FAN16G3510 Fragaria x ananassa HOM05D000113 ORTHO05D006161 4.4e-37 159.5 257 42.8
TWI59G0818 Tripterygium wilfordii HOM05D000113 ORTHO05D006161 3.7e-36 156.4 262 42.0
SGA_v2.0_scaffold334G49027 Striga asiatica HOM05D000113 ORTHO05D006161 1.8e-35 154.1 246 41.5
TAR362G0332 Trochodendron aralioides HOM05D000113 ORTHO05D006161 4.1e-35 152.9 256 41.4
TAR633G2709 Trochodendron aralioides HOM05D000113 ORTHO05D006161 4.1e-35 152.9 258 40.3
vmacro04631 Vaccinium macrocarpon HOM05D000113 ORTHO05D006161 5.4e-35 152.5 271 40.2
Nn5g26851 Nelumbo nucifera HOM05D000113 ORTHO05D006161 7.0e-35 152.1 256 41.4
RcHm_v2.0_Chr2g0168441 Rosa chinensis HOM05D000113 ORTHO05D014811 9.1e-35 151.8 108 74.1
Rhsim01G0287700 Rhododendron simsii HOM05D000113 ORTHO05D006161 2.0e-34 150.6 270 39.6
Sopen01g039450 Solanum pennellii HOM05D000113 ORTHO05D006161 1.7e-33 147.5 261 40.6
Hma1.2p1_0212F.1_g090260 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 5.0e-33 146.0 254 40.6
PSO339G3312 Papaver somniferum HOM05D000113 ORTHO05D006161 6.6e-33 145.6 252 41.3
Lj2C1199T13 Lonicera japonica HOM05D000113 ORTHO05D006161 8.6e-33 145.2 251 42.2
DCAR_012372 Daucus carota HOM05D000113 ORTHO05D006161 1.1e-32 144.8 247 39.7
Migut.D00126 Erythranthe guttata HOM05D000113 ORTHO05D006161 1.1e-32 144.8 246 39.4
CAN.G986.23 Capsicum annuum HOM05D000113 ORTHO05D006161 1.5e-32 144.4 259 39.4
Nitab4.5_0004367g0140 Nicotiana tabacum HOM05D000113 ORTHO05D006161 1.5e-32 144.4 257 39.3
PSO675G6280 Papaver somniferum HOM05D000113 ORTHO05D006161 1.5e-32 144.4 264 39.8
PGSC0003DMG401000100 Solanum tuberosum HOM05D000113 ORTHO05D006161 1.5e-32 144.4 258 39.1
Dinv42093 Davidia involucrata HOM05D000113 ORTHO05D006161 1.9e-32 144.1 257 39.3
CSS0016737 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 2.5e-32 143.7 257 41.6
Lj5A370T56 Lonicera japonica HOM05D000113 ORTHO05D006161 2.5e-32 143.7 251 42.2
Sc26g0003690 Simmondsia chinensis HOM05D000113 ORTHO05D006161 2.5e-32 143.7 268 38.4
Actinidia25823 Actinidia chinensis HOM05D000113 ORTHO05D006161 3.3e-32 143.3 258 39.9
Peaxi162Scf00150g00139 Petunia axillaris HOM05D000113 ORTHO05D006161 4.2e-32 142.9 258 39.1
Sed0026170 Sechium edule HOM05D000113 ORTHO05D006161 7.2e-32 142.1 259 39.8
Oeu008340.1 Olea europaea HOM05D000113 ORTHO05D006161 9.5e-32 141.7 250 39.2
COL.COLO4_23301 Corchorus olitorius HOM05D000113 ORTHO05D006161 1.2e-31 141.4 261 39.5
DCAR_018927 Daucus carota HOM05D000310 ORTHO05D006161 1.2e-31 141.4 247 40.1
Solyc01g095710.3 Solanum lycopersicum HOM05D000113 ORTHO05D006161 1.2e-31 141.4 261 39.5
CANSAT80G0530 Cannabis sativa HOM05D000113 ORTHO05D006161 2.1e-31 140.6 273 38.8
HanXRQChr04g0105431 Helianthus annuus HOM05D000113 ORTHO05D006161 2.1e-31 140.6 243 39.5
Os02g0736600 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D006161 2.8e-31 140.2 246 37.0
QL12p027746 Quercus lobata HOM05D000113 ORTHO05D006161 4.7e-31 139.4 258 38.4
MSTRG.21654 Avicennia marina HOM05D000113 ORTHO05D006161 8.0e-31 138.7 250 38.0
SalBow6G1114 Salvia bowleyana HOM05D000113 ORTHO05D006161 8.0e-31 138.7 255 39.2
Manes.01G223000 Manihot esculenta HOM05D000113 ORTHO05D006161 1.4e-30 137.9 256 39.5
ATR0307G121 Amborella trichopoda HOM05D000113 ORTHO05D006161 1.8e-30 137.5 259 38.6
Thecc.01G306300 Theobroma cacao HOM05D000113 ORTHO05D006161 1.8e-30 137.5 258 39.1
Sc15g0001890 Simmondsia chinensis HOM05D000113 ORTHO05D006161 2.3e-30 137.1 259 38.2
Thecc.10G083300 Theobroma cacao HOM05D000113 ORTHO05D006161 2.3e-30 137.1 263 39.2
ECA248G0290 Erigeron canadensis HOM05D000113 ORTHO05D006161 3.0e-30 136.7 273 35.5
ClCG09G005490 Citrullus lanatus HOM05D000113 ORTHO05D006161 5.2e-30 136.0 256 37.1
CiPaw.07G112500 Carya illinoinensis HOM05D000113 ORTHO05D006161 6.8e-30 135.6 260 39.6
FAN09G2231 Fragaria x ananassa HOM05D016056 ORTHO05D014811 8.9e-30 135.2 118 63.6
PGR044G2751 Punica granatum HOM05D000113 ORTHO05D006161 8.9e-30 135.2 261 38.7
Duzib138G1872 Durio zibethinus HOM05D000113 ORTHO05D006161 1.2e-29 134.8 258 38.4
Aa31LG1G28830 Aethionema arabicum HOM05D000113 ORTHO05D006161 1.5e-29 134.4 259 37.5
Cpa.g.sc151.33 Carica papaya HOM05D000113 ORTHO05D006161 2.0e-29 134.0 258 38.0
MELO3C015960.2 Cucumis melo HOM05D000113 ORTHO05D006161 2.0e-29 134.0 288 34.7
Gohir.D07G130400 Gossypium hirsutum HOM05D000113 ORTHO05D006161 2.0e-29 134.0 262 38.2
Gorai.001G141100 Gossypium raimondii HOM05D000113 ORTHO05D006161 2.0e-29 134.0 262 38.5
CsaV3_7G029610 Cucumis sativus L. HOM05D000113 ORTHO05D006161 2.6e-29 133.7 288 35.8
BcaC03g17455 Brassica carinata HOM05D000113 ORTHO05D006161 3.4e-29 133.3 239 36.8
AL8G14950 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 4.4e-29 132.9 280 35.7
Eucgr.E04059 Eucalyptus grandis HOM05D000113 ORTHO05D006161 4.4e-29 132.9 263 38.8
unitig_22.g5234 Utricularia gibba HOM05D000113 ORTHO05D006161 5.7e-29 132.5 254 36.2
AL1G47770 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 7.5e-29 132.1 260 36.5
Cc08_g12990 Coffea canephora HOM05D000113 ORTHO05D006161 1.3e-28 131.3 269 36.8
Thhalv10024243m.g Eutrema salsugineum HOM05D000113 ORTHO05D006161 1.3e-28 131.3 257 37.4
Lsat_1_v5_gn_3_139220 Lactuca sativa HOM05D000113 ORTHO05D006161 1.3e-28 131.3 255 36.9
THA.LOC104802184 Tarenaya hassleriana HOM05D000113 ORTHO05D006161 1.3e-28 131.3 279 35.1
Potri.002G201400 Populus trichocarpa HOM05D000113 ORTHO05D006161 1.7e-28 131.0 256 36.7
Carub.0001s3158 Capsella rubella HOM05D000113 ORTHO05D006161 2.2e-28 130.6 256 36.3
CARHR032810 Cardamine hirsuta HOM05D000113 ORTHO05D006161 2.2e-28 130.6 293 35.8
Gohir.A07G126300 Gossypium hirsutum HOM05D000113 ORTHO05D006161 3.7e-28 129.8 262 37.8
EL10Ac6g14998 Beta vulgaris HOM05D000113 ORTHO05D006161 6.3e-28 129.0 259 36.3
Hma1.2p1_0098F.1_g048470 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 6.3e-28 129.0 382 29.3
Zm00001eb253900 Zea mays HOM05D000113 ORTHO05D006161 1.4e-27 127.9 255 35.3
AT1G33390 Arabidopsis thaliana HOM05D000113 ORTHO05D006161 1.8e-27 127.5 261 36.0
Sp7g11220 Schrenkiella parvula HOM05D000113 ORTHO05D006161 1.8e-27 127.5 256 36.3
A02p35320 Brassica napus HOM05D000113 ORTHO05D006161 2.4e-27 127.1 245 37.6
Glyma.01G142700 Glycine max HOM05D000113 ORTHO05D006161 3.1e-27 126.7 254 37.8
BcaC03g17457 Brassica carinata HOM05D000113 ORTHO05D006161 1.2e-26 124.8 244 37.7
C02p54060 Brassica napus HOM05D000113 ORTHO05D006161 1.2e-26 124.8 245 37.1
BolC2t11468H Brassica oleracea HOM05D000113 ORTHO05D006161 1.2e-26 124.8 245 37.1
BraA02t08535Z Brassica rapa HOM05D000113 ORTHO05D006161 1.2e-26 124.8 245 37.1
arahy.Tifrunner.gnm1.ann1.M111ST Arachis hypogaea HOM05D000113 ORTHO05D006161 2.0e-26 124.0 263 36.9
TPR.G23919 Trifolium pratense HOM05D000113 ORTHO05D006161 2.0e-26 124.0 207 41.5
arahy.Tifrunner.gnm1.ann1.SIBB7F Arachis hypogaea HOM05D000113 ORTHO05D006161 2.7e-26 123.6 263 36.9
EL10Ac4g10264 Beta vulgaris HOM05D000113 ORTHO05D006161 4.5e-26 122.9 251 36.3
Lj2g0016628 Lotus japonicus HOM05D000113 ORTHO05D006161 4.5e-26 122.9 253 35.6
EL10Ac4g07792 Beta vulgaris HOM05D000113 ORTHO05D006161 7.8e-26 122.1 251 36.7
EL10Ac4g10280 Beta vulgaris HOM05D000113 ORTHO05D006161 7.8e-26 122.1 250 36.0
MBI04_g31155_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D006161 7.8e-26 122.1 256 35.5
Ciclev10018519m.g Citrus clementina HOM05D000113 ORTHO05D006161 1.0e-25 121.7 255 38.4
Phvul.010G084200 Phaseolus vulgaris HOM05D000113 ORTHO05D006161 1.0e-25 121.7 252 36.9
CSS0034422 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 1.7e-25 120.9 238 38.7
Lj4g0011992 Lotus japonicus HOM05D000113 ORTHO05D006161 1.7e-25 120.9 253 34.8
Glyma.03G024000 Glycine max HOM05D000113 ORTHO05D006161 2.3e-25 120.6 252 36.1
RcHm_v2.0_Chr2g0168431 Rosa chinensis HOM05D000113 ORTHO05D014811 5.0e-25 119.4 124 57.3
GSVIVG01028054001 Vitis vinifera HOM05D000113 ORTHO05D006161 5.0e-25 119.4 169 43.2
Lalb_Chr10g0099391 Lupinus albus HOM05D000113 ORTHO05D006161 2.5e-24 117.1 253 37.2
Ca_15122_v3 Cicer arietinum L. HOM05D000113 ORTHO05D006161 7.3e-24 115.5 253 34.8
Hund05453 Selenicereus undatus HOM05D000113 ORTHO05D006161 9.5e-24 115.2 248 33.5
Hma1.2p1_0098F.1_g048420 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 2.8e-23 113.6 211 35.5
TPR.G9858 Trifolium pratense HOM05D000113 ORTHO05D006161 4.7e-23 112.8 250 34.8
Medtr4g120070 Medicago truncatula HOM05D000113 ORTHO05D006161 8.0e-23 112.1 253 34.8
Cfa005867 Carpinus fangiana HOM05D000113 ORTHO05D006161 1.8e-22 110.9 233 37.3
Medtr4g023590 Medicago truncatula HOM05D000113 ORTHO05D006161 1.8e-22 110.9 253 34.4
Haze_04980 Corylus avellana HOM05D001493 ORTHO05D006161 6.8e-22 109.0 261 31.8
SHI19097 Sapria himalayana HOM05D000113 ORTHO05D006161 4.4e-21 106.3 262 32.1
AUR62008717 Chenopodium quinoa HOM05D000113 ORTHO05D006161 9.8e-21 105.1 258 33.7
AUR62025517 Chenopodium quinoa HOM05D000113 ORTHO05D006161 1.7e-20 104.4 259 33.6
VMungo0331G1928 Vigna mungo HOM05D001793 ORTHO05D006161 2.2e-20 104.0 254 35.4
SEGI_29750 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 2.9e-20 103.6 254 32.7
Atru.chr9.1268 Acer truncatum HOM05D000113 ORTHO05D006161 6.4e-20 102.4 140 47.9
SEGI_22008 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 6.4e-20 102.4 254 32.3
Psat7g233480 Pisum sativum HOM05D000113 ORTHO05D006161 1.4e-19 101.3 253 34.4
BcaB07g30168 Brassica carinata HOM05D000113 ORTHO05D006161 5.4e-19 99.4 220 32.7
Migut.G00075 Erythranthe guttata HOM05D000113 ORTHO05D006161 3.5e-18 96.7 217 34.1
Atru.chr5.1086 Acer truncatum HOM05D000113 ORTHO05D006161 3.0e-17 93.6 256 32.0
AagrBONN_evm.TU.Sc2ySwM_344.808 Anthoceros agrestis HOM05D000482 ORTHO05D000349 3.0e-17 93.6 269 29.7
Pp3c3_18630 Physcomitrium patens HOM05D000113 ORTHO05D006161 6.6e-17 92.4 306 27.5
RcHm_v2.0_Chr2g0168451 Rosa chinensis HOM05D000113 ORTHO05D006161 3.4e-13 80.1 100 51.0
SMO367G1023 Selaginella moellendorffii HOM05D000113 ORTHO05D006161 5.8e-13 79.3 254 27.6
CDE07G0864 Ceratophyllum demersum HOM05D000113 ORTHO05D006161 7.5e-13 79.0 215 33.0
Mapoly0044s0018 Marchantia polymorpha HOM05D000113 ORTHO05D006161 2.4e-11 73.9 285 25.6
RcHm_v2.0_Chr7g0220161 Rosa chinensis HOM05D000113 ORTHO05D006161 2.1e-10 70.9 58 69.0
FAN05G5637 Fragaria x ananassa HOM05D016056 ORTHO05D035858 2.3e-09 67.4 35 94.3
CBR_g66799 Chara braunii HOM05D000113 ORTHO05D006161 4.3e-08 63.2 288 26.4
AagrBONN_evm.TU.Sc2ySwM_344.844 Anthoceros agrestis HOM05D000113 ORTHO05D014811 2.3e-06 57.4 84 38.1
RcHm_v2.0_Chr4g0386401 Rosa chinensis HOM05D000113 ORTHO05D006161 5.2e-06 56.2 53 56.6


User provided reference genes

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