Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 7.3e-36 153.7 97 100.0
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 3.4e-33 144.8 96 82.3
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.4e-23 112.8 96 75.0
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 2.4e-23 112.1 95 67.4
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 3.2e-23 111.7 96 64.6
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 1.3e-21 106.3 96 71.9
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.9e-21 104.8 95 69.5
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 5.1e-21 104.4 96 75.0
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 6.7e-21 104.0 95 72.6
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.5e-20 102.8 95 70.5
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 1.9e-20 102.4 95 70.5
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 1.9e-20 102.4 96 77.1
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 2.5e-20 102.1 96 57.3
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 4.3e-20 101.3 96 46.9
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 1.3e-19 99.8 95 66.3
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.6e-19 99.4 95 69.5
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 3.7e-19 98.2 96 67.7
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 4.8e-19 97.8 46 97.8
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 4.8e-19 97.8 96 49.0
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 8.2e-19 97.1 94 69.1
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 8.2e-19 97.1 95 68.4
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.1e-18 96.7 95 61.1
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.4e-18 96.3 95 61.1
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 2.4e-18 95.5 96 67.7
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 2.4e-18 95.5 96 67.7
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 3.1e-18 95.1 95 68.4
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 3.1e-18 95.1 95 68.4
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 3.1e-18 95.1 95 66.3
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 3.1e-18 95.1 96 64.6
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 4.0e-18 94.7 95 68.4
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 9.0e-18 93.6 95 64.2
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 9.0e-18 93.6 95 66.3
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 1.2e-17 93.2 94 69.1
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.2e-17 93.2 96 66.7
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.0e-17 92.4 96 64.6
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.6e-17 92.0 96 66.7
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.6e-17 92.0 96 66.7
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 3.4e-17 91.7 94 68.1
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 5.8e-17 90.9 95 63.2
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 7.6e-17 90.5 95 58.9
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 7.6e-17 90.5 95 60.0
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 7.6e-17 90.5 96 64.6
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 7.6e-17 90.5 95 63.2
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 1.0e-16 90.1 94 59.6
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 1.0e-16 90.1 96 61.5
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 1.3e-16 89.7 96 60.4
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 1.7e-16 89.4 95 62.1
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.7e-16 89.4 96 63.5
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.7e-16 89.4 95 62.1
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 2.2e-16 89.0 96 63.5
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 2.9e-16 88.6 95 67.4
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 3.8e-16 88.2 95 64.2
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 4.9e-16 87.8 96 62.5
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 4.9e-16 87.8 96 61.5
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 4.9e-16 87.8 96 63.5
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 6.5e-16 87.4 94 62.8
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 6.5e-16 87.4 94 64.9
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 6.5e-16 87.4 96 63.5
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 6.5e-16 87.4 95 64.2
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 6.5e-16 87.4 95 64.2
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 8.4e-16 87.0 96 38.5
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 8.4e-16 87.0 96 60.4
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 1.1e-15 86.7 97 41.2
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.9e-15 85.9 96 62.5
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 1.9e-15 85.9 95 64.2
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 2.5e-15 85.5 95 62.1
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 2.5e-15 85.5 96 59.4
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 2.5e-15 85.5 46 76.1
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 2.5e-15 85.5 96 60.4
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 3.2e-15 85.1 96 61.5
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 3.2e-15 85.1 96 62.5
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 3.2e-15 85.1 96 60.4
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.2e-15 84.7 96 59.4
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.2e-15 84.7 96 59.4
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 4.2e-15 84.7 96 59.4
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 5.5e-15 84.3 96 61.5
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.5e-15 84.3 96 63.5
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.5e-15 84.3 96 59.4
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.5e-15 84.3 96 59.4
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.5e-15 84.3 96 59.4
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.1e-15 84.0 96 61.5
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 9.3e-15 83.6 96 60.4
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 9.3e-15 83.6 90 38.9
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 9.3e-15 83.6 96 56.2
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 1.6e-14 82.8 96 61.5
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 2.1e-14 82.4 95 65.3
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.7e-14 82.0 96 60.4
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.7e-14 82.0 96 60.4
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 3.5e-14 81.6 96 60.4
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 6.0e-14 80.9 96 50.0
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 1.0e-13 80.1 87 60.9
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 1.0e-13 80.1 87 60.9
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 2.3e-13 79.0 96 57.3
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 3.0e-13 78.6 96 59.4
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 3.0e-13 78.6 46 69.6
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 3.9e-13 78.2 95 56.8
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 5.1e-13 77.8 94 35.1
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 5.1e-13 77.8 96 59.4
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 4.3e-12 74.7 94 56.4
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 9.7e-12 73.6 87 59.8
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 1.6e-11 72.8 95 55.8
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.6e-11 72.8 94 51.1
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 2.2e-11 72.4 96 51.0
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 3.7e-11 71.6 46 60.9
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 6.3e-11 70.9 94 55.3
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 6.3e-11 70.9 94 55.3
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.4e-10 68.9 46 67.4
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 3.1e-10 68.6 95 35.8
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 3.1e-10 68.6 95 35.8
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 3.1e-10 68.6 95 35.8
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 4.1e-10 68.2 73 45.2
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 5.3e-10 67.8 94 36.2
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 5.3e-10 67.8 46 52.2
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 2.0e-09 65.9 95 33.7
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 2.0e-09 65.9 95 33.7
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 2.0e-09 65.9 95 33.7
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 5.9e-09 64.3 94 53.2
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 5.9e-09 64.3 95 49.5
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 7.6e-09 63.9 85 35.3
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 1.3e-08 63.2 96 33.3
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.4e-07 59.7 94 51.1
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 3.2e-07 58.5 94 50.0
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 4.2e-07 58.2 94 47.9
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 9.3e-07 57.0 94 48.9
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 9.3e-07 57.0 94 48.9
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 9.3e-07 57.0 94 48.9
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.6e-06 56.2 94 47.9
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 2.1e-06 55.8 46 47.8
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 2.7e-06 55.5 96 50.0


User provided reference genes

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